rewirebio.iobenchmarks
Dataset subset

pancreas

Source-defined subset: pancreas. Exact membership and scoring coverage remain as reported in the cited artifact.

Evaluation results

69 evaluations · 821 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: scanorama_full · full_feature, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.999 Scib clisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanorama_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 63, column 13 (cLISI)
Configuration: fastmnn_full · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.259 Scib HVG overlap
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

fastmnn_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 374, column 14 (hvg_overlap)
Configuration: scvi_embed · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.949 Adjusted rand index (clusters vs cell-type labels)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scvi_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 230, column 3 (ARI_cluster/label)
Configuration: scvi_embed · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.335 Scib kbet
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scvi_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 231, column 11 (kBET)
Configuration: scanorama_full · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.463 Scib cell cycle conservation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanorama_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 50, column 7 (cell_cycle_conservation)
Configuration: scanorama_embed · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.424 Scib kbet
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanorama_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 11 (kBET)
Configuration: bbknn_knn · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.856 Scib clisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

bbknn_knn · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 207, column 13 (cLISI)
Configuration: combat_full · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.957 Scib graph connectivity
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

combat_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 10 (graph_conn)
Configuration: combat_full · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.207 Scib HVG overlap
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

combat_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 14 (hvg_overlap)
Configuration: desc_embed · full_feature, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.885 Scib pcr batch
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

desc_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 399, column 6 (PCR_batch)
Configuration: seuratrpca_full · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.125 Scib isolated label F1
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

seuratrpca_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 110, column 8 (isolated_label_F1)
Configuration: conos_knn · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0 Scib ilisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

conos_knn · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 254, column 12 (iLISI)
Configuration: saucie_embed · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.79 Scib pcr batch
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

saucie_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 146, column 6 (PCR_batch)
Configuration: conos_knn · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.998 Scib clisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

conos_knn · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 255, column 13 (cLISI)
Configuration: scanvi_embed · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.558 Scib isolated label silhouette
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanvi_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 243, column 9 (isolated_label_silhouette)
Configuration: seurat_full · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.866 Normalized mutual information (clusters vs cell-type labels)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

seurat_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 75, column 2 (NMI_cluster/label)
Configuration: scanorama_embed · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.317 Scib ilisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanorama_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 12 (iLISI)
Configuration: scanorama_embed · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.999 Scib clisi
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scanorama_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 13 (cLISI)
Configuration: fastmnn_embed · full_feature, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.545 Scib isolated label silhouette
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

fastmnn_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 9 (isolated_label_silhouette)
Configuration: conos_knn · hvg, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.996 Scib graph connectivity
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

conos_knn · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 266, column 10 (graph_conn)
Configuration: mnn_full · full_feature, scaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.541 Scib asw label
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

mnn_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 15, column 4 (ASW_label)
Configuration: combat_full · full_feature, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.877 Scib asw batch
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

combat_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 5 (ASW_label/batch)
Configuration: scvi_embed · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.437 Scib kbet
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

scvi_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 230, column 11 (kBET)
Configuration: desc_embed · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.552 Scib kbet
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

desc_embed · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 386, column 11 (kBET)
Configuration: combat_full · hvg, unscaledProtocol: scIB official RNA metrics export · pancreas
Dataset subset: pancreas
0.106 Scib isolated label F1
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

combat_full · scIB official RNA metrics export · pancreas

scIB official RNA metrics export

Aggregation: unreported

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 278, column 8 (isolated_label_F1)

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

3 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Source location
data/metrics.csv row 2, column 2 (NMI_cluster/label)
Context-only references
scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f

Original source ↗

data/metrics.csv row 2, column 2 (NMI_cluster/label)

Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Description
Source-defined subset: pancreas. Exact membership and scoring coverage remain as reported in the cited artifact.
Context-only references
scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f

Original source ↗

data/metrics.csv row 2, column 2 (NMI_cluster/label)

Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Name
pancreas
Context-only references
scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f

Original source ↗

data/metrics.csv row 2, column 2 (NMI_cluster/label)

Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: acquired-dataset-846290e341debcdcb243

source locator
data/metrics.csv row 2, column 2 (NMI_cluster/label)
missing metadata
split manifest: reason: unextracted
Related records

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