| Configuration: scanorama_full · full_feature, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.999 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanorama_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 63, column 13 (cLISI) |
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| Configuration: fastmnn_full · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.259 Scib HVG overlap unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefastmnn_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 374, column 14 (hvg_overlap) |
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| Configuration: scvi_embed · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.949 Adjusted rand index (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescvi_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 230, column 3 (ARI_cluster/label) |
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| Configuration: scvi_embed · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.335 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescvi_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 231, column 11 (kBET) |
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| Configuration: scanorama_full · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.463 Scib cell cycle conservation unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanorama_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 50, column 7 (cell_cycle_conservation) |
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| Configuration: scanorama_embed · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.424 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanorama_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 11 (kBET) |
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| Configuration: bbknn_knn · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.856 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcebbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 207, column 13 (cLISI) |
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| Configuration: combat_full · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.957 Scib graph connectivity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcecombat_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 10 (graph_conn) |
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| Configuration: combat_full · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.207 Scib HVG overlap unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcecombat_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 14 (hvg_overlap) |
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| Configuration: desc_embed · full_feature, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.885 Scib pcr batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcedesc_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 399, column 6 (PCR_batch) |
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| Configuration: seuratrpca_full · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.125 Scib isolated label F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceseuratrpca_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 110, column 8 (isolated_label_F1) |
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| Configuration: conos_knn · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0 Scib ilisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceconos_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 254, column 12 (iLISI) |
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| Configuration: saucie_embed · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.79 Scib pcr batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcesaucie_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 146, column 6 (PCR_batch) |
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| Configuration: conos_knn · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.998 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceconos_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 255, column 13 (cLISI) |
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| Configuration: scanvi_embed · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.558 Scib isolated label silhouette unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanvi_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 243, column 9 (isolated_label_silhouette) |
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| Configuration: seurat_full · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.866 Normalized mutual information (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceseurat_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 75, column 2 (NMI_cluster/label) |
|---|
| Configuration: scanorama_embed · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.317 Scib ilisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanorama_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 12 (iLISI) |
|---|
| Configuration: scanorama_embed · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.999 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescanorama_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 38, column 13 (cLISI) |
|---|
| Configuration: fastmnn_embed · full_feature, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.545 Scib isolated label silhouette unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 9 (isolated_label_silhouette) |
|---|
| Configuration: conos_knn · hvg, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.996 Scib graph connectivity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceconos_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 266, column 10 (graph_conn) |
|---|
| Configuration: mnn_full · full_feature, scaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.541 Scib asw label unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcemnn_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 15, column 4 (ASW_label) |
|---|
| Configuration: combat_full · full_feature, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.877 Scib asw batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcecombat_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 279, column 5 (ASW_label/batch) |
|---|
| Configuration: scvi_embed · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.437 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcescvi_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 230, column 11 (kBET) |
|---|
| Configuration: desc_embed · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.552 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcedesc_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 386, column 11 (kBET) |
|---|
| Configuration: combat_full · hvg, unscaled | Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas | 0.106 Scib isolated label F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcecombat_full · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 278, column 8 (isolated_label_F1) |
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