Configuration

fastmnn_embed · full_feature, scaled

Entry in scIB, identified only by its entry label; the model or method behind it is not identified.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 12 results. Different protocols are not a single leaderboard.

Protocol: scIB official RNA metrics export · pancreas · Dataset subset: pancreas

Sorted by Adjusted rand index (clusters vs cell-type labels) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Adjusted rand index (clusters vs cell-type labels)	Normalized mutual information (clusters vs cell-type labels)	Scib asw batch	Scib asw label	Scib cell cycle conservation	Scib clisi	Scib graph connectivity	Scib ilisi	Scib isolated label F1	Scib isolated label silhouette	Scib kbet	Scib pcr batch
fastmnn_embed · full_feature, scaledEvaluation	0.72	0.774	0.877	0.514	0.222	0.987	0.978	0.342	0.115	0.545	0.489	0.995

All 12 result rows with coverage, uncertainty and sources

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.545 Scib isolated label silhouette unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 9 (isolated_label_silhouette)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.995 Scib pcr batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 6 (PCR_batch)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.72 Adjusted rand index (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 3 (ARI_cluster/label)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.877 Scib asw batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 5 (ASW_label/batch)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.774 Normalized mutual information (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 2 (NMI_cluster/label)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.987 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 13 (cLISI)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.489 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 11 (kBET)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.978 Scib graph connectivity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 10 (graph_conn)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.222 Scib cell cycle conservation unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 7 (cell_cycle_conservation)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.514 Scib asw label unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 4 (ASW_label)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.115 Scib isolated label F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 8 (isolated_label_F1)
Configuration: fastmnn_embed · full_feature, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.342 Scib ilisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source fastmnn_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 351, column 12 (iLISI)

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
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Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f

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Technical metadata and extraction receipts

Stable ID: acquired-configuration-fd2e72fdc034a2b49579

source locator: data/metrics.csv row 351, column 2 (NMI_cluster/label)
reported configuration: fastmnn_embed
missing metadata: checkpoint revision: reason: unreported; model family: reason: unextracted
provenance note: Exact source-reported configuration or submission label. Family membership, checkpoint identity and aliases have not been inferred.

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system: fastmnn_embed · scIB official RNA metrics export · pancreas

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