scvi_embed · full_feature, unscaled: family scVI
The official benchmark maps the scVI method identity and embedding/full-feature/HVG variants. Keep full_feature versus hvg, unscaled inputs and source version distinct; this establishes method family, not fitted weights.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
24 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field links:family:catalog-model-scvi Context-only references | scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.field links:family:catalog-model-scvi Context-only references | scIB official method labels at 3afbffd scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.field links:family:catalog-model-scvi Context-only references | scIB official method/output decoding at 3afbffd scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.field links:family:catalog-model-scvi Context-only references | scverse/scvi-tools: docs/user_guide/models/scvi.md scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 73b28e44223621470e582a81a102c107bb22678b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.source_locator scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Context-only references | scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.source_locator scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Context-only references | scIB official method labels at 3afbffd scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Context-only references | scIB official method/output decoding at 3afbffd scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Context-only references | scverse/scvi-tools: docs/user_guide/models/scvi.md scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 73b28e44223621470e582a81a102c107bb22678b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.target_id catalog-model-scvi Context-only references | scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.target_id catalog-model-scvi Context-only references | scIB official method labels at 3afbffd scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
4 source records and release history
- scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f
- scIB official method labels at 3afbffd · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f
- scverse/scvi-tools: docs/user_guide/models/scvi.md · Original source · 73b28e44223621470e582a81a102c107bb22678b
- scIB official method/output decoding at 3afbffd · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f
Technical metadata and extraction receipts
Stable ID: model-evaluation-identity-fd54b51fad601df103d7
- field
- links:family:catalog-model-scvi
- target id
- catalog-model-scvi
- source locator
- scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180
- review
- method: automated_source_review; date: 2026-09-23; note: Source review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. The official benchmark maps the scVI method identity and embedding/full-feature/HVG variants. Keep full_feature versus hvg, unscaled inputs and source version distinct; this establishes method family, not fitted weights.
Related records
- subject: scvi_embed · full_feature, unscaled