Configuration

bbknn_knn · hvg, scaled

Entry in scIB, identified only by its entry label; the model or method behind it is not identified.

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 7 results. Different protocols are not a single leaderboard.

Protocol: scIB official RNA metrics export · pancreas · Dataset subset: pancreas

Sorted by Adjusted rand index (clusters vs cell-type labels) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Adjusted rand index (clusters vs cell-type labels)	Normalized mutual information (clusters vs cell-type labels)	Scib clisi	Scib graph connectivity	Scib ilisi	Scib isolated label F1	Scib kbet
bbknn_knn · hvg, scaledEvaluation	0.915	0.861	0.663	0.994	0.405	0.0886	0.509

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.994 Scib graph connectivity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 10 (graph_conn)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.405 Scib ilisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 12 (iLISI)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.861 Normalized mutual information (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 2 (NMI_cluster/label)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.509 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 11 (kBET)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.0886 Scib isolated label F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 8 (isolated_label_F1)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.915 Adjusted rand index (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 3 (ARI_cluster/label)
Configuration: bbknn_knn · hvg, scaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.663 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source bbknn_knn · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 218, column 13 (cLISI)

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f

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Technical metadata and extraction receipts

Stable ID: acquired-configuration-7c23e9f53a76a47eb235

source locator: data/metrics.csv row 218, column 2 (NMI_cluster/label)
reported configuration: bbknn_knn
missing metadata: checkpoint revision: reason: unreported; model family: reason: unextracted
provenance note: Exact source-reported configuration or submission label. Family membership, checkpoint identity and aliases have not been inferred.

Related records

system: bbknn_knn · scIB official RNA metrics export · pancreas

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