ProteinGym AMFR official zero-shot Spearman snapshot
Original official assay-level zero-shot comparison; mixed single/double substitutions, not the proposed singles-only experiment.
Overview
Original official assay-level zero-shot comparison; mixed single/double substitutions, not the proposed singles-only experiment.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
97 recorded evaluations, 97 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.
Results
Results are available, but no reviewed comparison panel is linked in this release.
All evaluations
97 evaluations · 97 results. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AIDO Protein-RAG (16B) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.445 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAIDO Protein-RAG (16B) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=AIDO Protein-RAG (16B) |
| Configuration: CARP (38M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | -0.185 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCARP (38M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=CARP (38M) |
| Configuration: CARP (600K) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | -0.194 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCARP (600K) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=CARP (600K) |
| Configuration: CARP (640M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.165 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCARP (640M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=CARP (640M) |
| Configuration: CARP (76M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.114 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCARP (76M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=CARP (76M) |
| Configuration: DeepSequence (ensemble) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.407 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSequence (ensemble) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=DeepSequence (ensemble) |
| Configuration: DeepSequence (single) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.419 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSequence (single) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=DeepSequence (single) |
| Configuration: ESCOTT [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.41 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESCOTT |
| Configuration: ESM-1b [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.374 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-1b |
| Configuration: ESM-1v (ensemble) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.423 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-1v (ensemble) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-1v (ensemble) |
| Configuration: ESM-1v (single) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.07 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-1v (single) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-1v (single) |
| Configuration: ESM-C (300M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.364 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-C (300M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-C (300M) |
| Configuration: ESM-C (600M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.262 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-C (600M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-C (600M) |
| Configuration: ESM-IF1 [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.433 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-IF1 AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM-IF1 |
| Configuration: ESM2 (150M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.321 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (150M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (150M) |
| Configuration: ESM2 (15B) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.26 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (15B) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (15B) |
| Configuration: ESM2 (35M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.286 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (35M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (35M) |
| Configuration: ESM2 (3B) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.297 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (3B) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (3B) |
| Configuration: ESM2 (650M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.261 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (650M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (650M) |
| Configuration: ESM2 (8M) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | -0.209 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 (8M) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM2 (8M) |
| Configuration: ESM3 open (1.4B) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.29 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 open (1.4B) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=ESM3 open (1.4B) |
| Configuration: EVE (ensemble) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.398 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEVE (ensemble) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=EVE (ensemble) |
| Configuration: EVE (single) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.386 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEVE (single) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=EVE (single) |
| Configuration: EVmutation [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.418 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEVmutation AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=EVmutation |
| Configuration: GEMME [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.396 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=GEMME |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO Protein-RAG (16B) AMFR official snapshot
- CARP (38M) AMFR official snapshot
- CARP (600K) AMFR official snapshot
- CARP (640M) AMFR official snapshot
- CARP (76M) AMFR official snapshot
- DeepSequence (ensemble) AMFR official snapshot
- DeepSequence (single) AMFR official snapshot
- ESCOTT AMFR official snapshot
- ESM-1b AMFR official snapshot
- ESM-1v (ensemble) AMFR official snapshot
- ESM-1v (single) AMFR official snapshot
- ESM-C (300M) AMFR official snapshot
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.
- Author-reported evaluations
- 97
Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
Proposed control: requires review
Protocol-valid seeded random ranking; no fitting on assay labels
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
Proposed control: requires review
Established label-free reference with explicitly permitted sequence/MSA inputs
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-30-e37e3ab1284d. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Applicable tests and references
Applicability is distinct from a completed evaluation.
- EVmutation AMFR evolutionary comparator · source_supported
- Site-Independent AMFR evolutionary comparator · source_supported
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-proteingym Individual claims | Protocol metadata evidence: proteingym-reference_files-DMS_substitutions.csv Official ProteinGym pinned benchmarks/DMS_zero_shot/substitutions/Spearman/DMS_substitutions_Spearman_DMS_level.csv; AMFR assay row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | source checked automated source review · 2026-09-30T21:44:09.612264+00:00 Audit detailsField: Claim: uc20260930-protocol-parent-fa51fe46268a4a99 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: part of discovery-benchmark-proteingym Individual claims | ProteinGym AMFR assay-level Spearman comparison Official ProteinGym pinned benchmarks/DMS_zero_shot/substitutions/Spearman/DMS_substitutions_Spearman_DMS_level.csv; AMFR assay row Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | source checked automated source review · 2026-09-30T21:44:09.612264+00:00 Audit detailsField: Claim: uc20260930-protocol-parent-fa51fe46268a4a99 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-30-e37e3ab1284d · Record review: source checked
2 source records and release history
- ProteinGym AMFR assay-level Spearman comparison · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- Protocol metadata evidence: proteingym-reference_files-DMS_substitutions.csv · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
Technical metadata and extraction receipts
Stable ID: uc20260930-proteingym-amfr-protocol
- areas
- proteins-complexes
- version
- 144fe22b07dfaeec2b366f2346203a9838a55b4c
- source locator
- DMS_substitutions_Spearman_DMS_level.csv row AMFR_HUMAN_Tsuboyama_2023_4G3O
- review
- method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.
- limitations
- Per-model scored counts, score transforms and checkpoint hashes unextracted; row Number of Mutants is assay count, not proof of complete predictions for each model.; Modalities differ across models; do not describe all as sequence-only.; Do not merge with local protocols.
Related records
- part of: ProteinGym
- applicable to: EVmutation AMFR evolutionary comparator
- applicable to: Site-Independent AMFR evolutionary comparator
- protocol: AIDO Protein-RAG (16B) AMFR official snapshot
- protocol: CARP (38M) AMFR official snapshot
- protocol: CARP (600K) AMFR official snapshot
- protocol: CARP (640M) AMFR official snapshot
- protocol: CARP (76M) AMFR official snapshot
- protocol: DeepSequence (ensemble) AMFR official snapshot
- protocol: DeepSequence (single) AMFR official snapshot
- protocol: ESCOTT AMFR official snapshot
- protocol: ESM-1b AMFR official snapshot
- protocol: ESM-1v (ensemble) AMFR official snapshot
- protocol: ESM-1v (single) AMFR official snapshot
- protocol: ESM-C (300M) AMFR official snapshot
- protocol: ESM-C (600M) AMFR official snapshot
- protocol: ESM-IF1 AMFR official snapshot
- protocol: ESM2 (150M) AMFR official snapshot
- protocol: ESM2 (15B) AMFR official snapshot
- protocol: ESM2 (35M) AMFR official snapshot
- protocol: ESM2 (3B) AMFR official snapshot
- protocol: ESM2 (650M) AMFR official snapshot
- protocol: ESM2 (8M) AMFR official snapshot
- protocol: ESM3 open (1.4B) AMFR official snapshot
- protocol: EVE (ensemble) AMFR official snapshot
- protocol: EVE (single) AMFR official snapshot
- protocol: EVmutation AMFR official snapshot
- protocol: GEMME AMFR official snapshot
- protocol: MIF AMFR official snapshot
- protocol: MIF-ST AMFR official snapshot
- protocol: MSA Transformer (ensemble) AMFR official snapshot
- protocol: MSA Transformer (single) AMFR official snapshot
- protocol: MULAN AMFR official snapshot
- protocol: PoET (200M) AMFR official snapshot
- protocol: Progen2 Base AMFR official snapshot
- protocol: Progen2 L AMFR official snapshot
- protocol: Progen2 M AMFR official snapshot
- protocol: Progen2 S AMFR official snapshot
- protocol: Progen2 XL AMFR official snapshot
- protocol: Progen3 112m AMFR official snapshot
- protocol: Progen3 1B AMFR official snapshot
- protocol: Progen3 219m AMFR official snapshot
- protocol: Progen3 339m AMFR official snapshot
- protocol: Progen3 3B AMFR official snapshot
- protocol: Progen3 762m AMFR official snapshot
- protocol: ProSST (K=1024) AMFR official snapshot
- protocol: ProSST (K=128) AMFR official snapshot
- protocol: ProSST (K=20) AMFR official snapshot
- protocol: ProSST (K=2048) AMFR official snapshot
- protocol: ProSST (K=4096) AMFR official snapshot
- protocol: ProSST (K=512) AMFR official snapshot
- protocol: ProteinMPNN AMFR official snapshot
- protocol: ProtGPT2 AMFR official snapshot
- protocol: Protriever AMFR official snapshot
- protocol: ProtSSN (ensemble) AMFR official snapshot
- protocol: ProtSSN (k=10, h=1280) AMFR official snapshot
- protocol: ProtSSN (k=10, h=512) AMFR official snapshot
- protocol: ProtSSN (k=10, h=768) AMFR official snapshot
- protocol: ProtSSN (k=20, h=1280) AMFR official snapshot
- protocol: ProtSSN (k=20, h=512) AMFR official snapshot
- protocol: ProtSSN (k=20, h=768) AMFR official snapshot
- protocol: ProtSSN (k=30, h=1280) AMFR official snapshot
- protocol: ProtSSN (k=30, h=512) AMFR official snapshot
- protocol: ProtSSN (k=30, h=768) AMFR official snapshot
- protocol: RITA L AMFR official snapshot
- protocol: RITA M AMFR official snapshot
- protocol: RITA S AMFR official snapshot
- protocol: RITA XL AMFR official snapshot
- protocol: RSALOR AMFR official snapshot
- protocol: S2F AMFR official snapshot
- protocol: S2F-MSA AMFR official snapshot
- protocol: S3F AMFR official snapshot
- protocol: S3F-MSA AMFR official snapshot
- protocol: SaProt (35M) AMFR official snapshot
- protocol: SaProt (650M) AMFR official snapshot
- protocol: Site-Independent AMFR official snapshot
- protocol: SiteRM AMFR official snapshot
- protocol: TranceptEVE L AMFR official snapshot
- protocol: TranceptEVE M AMFR official snapshot
- protocol: TranceptEVE S AMFR official snapshot
- protocol: Tranception L AMFR official snapshot
- protocol: Tranception L no retrieval AMFR official snapshot
- protocol: Tranception M AMFR official snapshot
- protocol: Tranception M no retrieval AMFR official snapshot
- protocol: Tranception S AMFR official snapshot
- protocol: Tranception S no retrieval AMFR official snapshot
- protocol: Unirep AMFR official snapshot
- protocol: Unirep evotuned AMFR official snapshot
- protocol: VenusREM AMFR official snapshot
- protocol: VESPA AMFR official snapshot
- protocol: VespaG AMFR official snapshot
- protocol: VESPAl AMFR official snapshot
- protocol: Wavenet AMFR official snapshot
- protocol: xTrimoPGLM-100B-int4 AMFR official snapshot
- protocol: xTrimoPGLM-10B-MLM AMFR official snapshot
- protocol: xTrimoPGLM-1B-CLM AMFR official snapshot
- protocol: xTrimoPGLM-1B-MLM AMFR official snapshot
- protocol: xTrimoPGLM-3B-CLM AMFR official snapshot
- protocol: xTrimoPGLM-3B-MLM AMFR official snapshot
- protocol: xTrimoPGLM-7B-CLM AMFR official snapshot
- subject: ProteinGym AMFR official zero-shot Spearman snapshot study membership