The split of NABench SELEX assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
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155 evaluations · 155 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AIDO.RNA | Task: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.599 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Few-shot Spearman ρ) |
| Configuration: AIDO.RNA | Task: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.687 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Random cross validation Spearman ρ) |
| Configuration: AIDO.RNA | Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Dataset subset: NABench SELEX assays (NABench split) | 0.547 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAIDO.RNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot AUC) |
| Configuration: AIDO.RNA | Task: NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.08 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot Spearman ρ) |
| Configuration: AIDO.RNA | Task: NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Dataset subset: NABench SELEX assays (NABench split) | 0.045 mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAIDO.RNA on NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot MCC) |
| Configuration: AIDO.RNA | Task: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Dataset subset: NABench SELEX assays (NABench split) | 0.266 ndcg fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot NDCG) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.588 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Few-shot Spearman ρ) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.681 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Random cross validation Spearman ρ) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Dataset subset: NABench SELEX assays (NABench split) | 0.546 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot AUC) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.076 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot Spearman ρ) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Dataset subset: NABench SELEX assays (NABench split) | 0.041 mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot MCC) |
| Configuration: BiRNA-BERT | Task: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Dataset subset: NABench SELEX assays (NABench split) | 0.3 ndcg fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot NDCG) |
| Configuration: Crafts | Task: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.571 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCrafts on NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Few-shot Spearman ρ) |
| Configuration: Crafts | Task: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.654 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Random cross validation Spearman ρ) |
| Configuration: Crafts | Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Dataset subset: NABench SELEX assays (NABench split) | 0.56 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCrafts on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot AUC) |
| Configuration: Crafts | Task: NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.104 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot Spearman ρ) |
| Configuration: Crafts | Task: NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Dataset subset: NABench SELEX assays (NABench split) | 0.054 mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCrafts on NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot MCC) |
| Configuration: Crafts | Task: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Dataset subset: NABench SELEX assays (NABench split) | 0.283 ndcg fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCrafts on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot NDCG) |
| Configuration: Dnabert_6 | Task: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.544 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Few-shot Spearman ρ) |
| Configuration: Dnabert_6 | Task: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.606 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Random cross validation Spearman ρ) |
| Configuration: Dnabert_6 | Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Dataset subset: NABench SELEX assays (NABench split) | 0.533 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot AUC) |
| Configuration: Dnabert_6 | Task: NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.06 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot Spearman ρ) |
| Configuration: Dnabert_6 | Task: NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Dataset subset: NABench SELEX assays (NABench split) | 0.035 mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDnabert_6 on NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot MCC) |
| Configuration: Dnabert_6 | Task: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Dataset subset: NABench SELEX assays (NABench split) | 0.293 ndcg fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot NDCG) |
| Configuration: Dnabert | Task: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Dataset subset: NABench SELEX assays (NABench split) | 0.582 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDnabert on NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Aggregated by the NABench authors across NABench SELEX assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Few-shot Spearman ρ) |
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2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of NABench SELEX assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name NABench SELEX assays (NABench split) Context-only references | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Stable ID: nabench-dataset-nabench-selex-assays