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Evaluation

Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC

NABench evaluation of Dnabert_6 on Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, scored with Zero-shot AUC.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

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Verified: Not verified

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Investigate discrepancies

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  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

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Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Dnabert_6Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
Dataset subset: NABench SELEX assays (NABench split)
0.533 auc
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC

Aggregated by the NABench authors across NABench SELEX assays.

Aggregation: Not reported

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot AUC)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

Aggregated by the NABench authors across NABench SELEX assays.

Configuration
Dnabert_6
Task
NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
Dataset subset
NABench SELEX assays (NABench split)
origin
Author-reported evaluation
configuration
Not reported
protocol id
nabench-task-selex-zs-auc
metric implementation
Zero-shot AUC

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
Zero-shot AUC

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

10 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.metric_implementation
Zero-shot AUC
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.protocol_id
nabench-task-selex-zs-auc
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.origin
author_reported
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.protocol
Aggregated by the NABench authors across NABench SELEX assays.
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.protocol

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.source_locator
Table 12, row(Dnabert_6), column(Zero-shot AUC)
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.source_locator

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

description
NABench evaluation of Dnabert_6 on Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, scored with Zero-shot AUC.
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: description

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: benchmark
nabench-task-selex-zs-auc
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:benchmark:nabench-task-selex-zs-auc

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: dataset
nabench-dataset-nabench-selex-assays
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:dataset:nabench-dataset-nabench-selex-assays

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: model
nabench-method-dnabert-6
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:model:nabench-method-dnabert-6

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name
Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 12, row(Dnabert_6), column(Zero-shot AUC)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: name

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: nabench-evaluation-dnabert-6-selex-zs-auc

areas
rna-transcriptomes
tasks
Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
origin
author_reported
protocol
Aggregated by the NABench authors across NABench SELEX assays.
comparison
protocol id: nabench-task-selex-zs-auc; metric implementation: Zero-shot AUC
missing metadata
checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator
Table 12, row(Dnabert_6), column(Zero-shot AUC)
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