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Dnabert_6

Dnabert_6: Nucleotide foundation model.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

43 evaluations · 43 results. Different protocols are not a single leaderboard.

Sorted by Spearman (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Spearman	AUROC	MCC	NDCG (cutoff not stated)
Dnabert_6Evaluation	NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ, NABench SELEX assays (NABench split)	0.606 (best in column)	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ, NABench SELEX assays (NABench split)	0.544	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation, NABench mRNA assays (NABench split)	0.481	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation, NABench tRNA assays (NABench split)	0.425	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation, NABench promoter assays (NABench split)	0.409	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.322	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation, NABench ribozyme assays (NABench split)	0.302	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation, NABench aptamer assays (NABench split)	0.263	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot, NABench aptamer assays (NABench split)	0.255	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation, NABench ribozyme assays (NABench split)	0.22	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation, NABench aptamer assays (NABench split)	0.173	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.163	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation, NABench mRNA assays (NABench split)	0.121	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	0.121	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot, NABench promoter assays (NABench split)	0.112	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.111	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot, NABench tRNA assays (NABench split)	0.105	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	0.103	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation, NABench enhancer assays (NABench split)	0.097	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot, NABench ribozyme assays (NABench split)	0.088	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot, NABench mRNA assays (NABench split)	0.084	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation, NABench enhancer assays (NABench split)	0.074	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.069	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation, NABench promoter assays (NABench split)	0.068	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation, NABench tRNA assays (NABench split)	0.064	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	0.061	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ, NABench SELEX assays (NABench split)	0.06	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	0.059	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	0.039	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot, NABench enhancer assays (NABench split)	0.027	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	0.027	Not reported	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC, NABench deep mutational scanning assays (NABench split)	Not reported	0.482	Not reported	Not reported
Dnabert_6Evaluation	NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	0.035 (best in column)	Not reported
Dnabert_6Evaluation	NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	Not reported	0.343 (best in column)
Dnabert_6Evaluation	NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, NABench SELEX assays (NABench split)	Not reported	0.533	Not reported	Not reported
Dnabert_6Evaluation	NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC, NABench SELEX assays (NABench split)	Not reported	Not reported	0.035 (best in column)	Not reported
Dnabert_6Evaluation	NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG, NABench SELEX assays (NABench split)	Not reported	Not reported	Not reported	0.293
Dnabert_6Evaluation	NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	Not reported	0.559 (best in column)	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	Not reported	0.535	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	Not reported	0.518	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	Not reported	0.536	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	Not reported	0.535	Not reported	Not reported
Dnabert_6Evaluation	NABench ZS-AUC-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	Not reported	0.53	Not reported	Not reported

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NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

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Stable ID: nabench-method-dnabert-6

areas: rna-transcriptomes
source locator: Table 7, row(Dnabert_6)
missing metadata: checkpoint revision: reason: unreported; parameters: reason: unextracted
provenance note: Nucleotide foundation model evaluated by the NABench authors under their fitness prediction protocol.

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Dnabert_6	Task: NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Dataset subset: NABench aptamer assays (NABench split)	0.173 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(aptamer)
Configuration: Dnabert_6	Task: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Dataset subset: NABench enhancer assays (NABench split)	0.074 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(enhancer)
Configuration: Dnabert_6	Task: NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Dataset subset: NABench mRNA assays (NABench split)	0.121 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(mRNA)
Configuration: Dnabert_6	Task: NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Dataset subset: NABench promoter assays (NABench split)	0.068 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(promoter)
Configuration: Dnabert_6	Task: NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.22 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(ribozyme)
Configuration: Dnabert_6	Task: NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Dataset subset: NABench tRNA assays (NABench split)	0.064 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(tRNA)
Configuration: Dnabert_6	Task: NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.163 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Contiguous cross validation Spearman ρ)
Configuration: Dnabert_6	Task: NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.111 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Few-shot Spearman ρ)
Configuration: Dnabert_6	Task: NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.322 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Random cross validation Spearman ρ)
Configuration: Dnabert_6	Task: NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.482 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Zero-shot AUC)
Configuration: Dnabert_6	Task: NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.069 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Zero-shot Spearman ρ)
Configuration: Dnabert_6	Task: NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.035 MCC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Zero-shot MCC)
Configuration: Dnabert_6	Task: NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Dataset subset: NABench deep mutational scanning assays (NABench split)	0.343 NDCG (cutoff not stated) unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(Dnabert_6), column(Zero-shot NDCG)
Configuration: Dnabert_6	Task: NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Dataset subset: NABench aptamer assays (NABench split)	0.255 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Scored few-shot across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(aptamer)
Configuration: Dnabert_6	Task: NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Dataset subset: NABench enhancer assays (NABench split)	0.027 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Scored few-shot across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(enhancer)
Configuration: Dnabert_6	Task: NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Dataset subset: NABench mRNA assays (NABench split)	0.084 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Scored few-shot across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(mRNA)
Configuration: Dnabert_6	Task: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Dataset subset: NABench promoter assays (NABench split)	0.112 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Scored few-shot across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(promoter)
Configuration: Dnabert_6	Task: NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Dataset subset: NABench ribozyme assays (NABench split)	0.088 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Scored few-shot across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(ribozyme)
Configuration: Dnabert_6	Task: NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Dataset subset: NABench tRNA assays (NABench split)	0.105 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Scored few-shot across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(tRNA)
Configuration: Dnabert_6	Task: NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Dataset subset: NABench aptamer assays (NABench split)	0.263 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(aptamer)
Configuration: Dnabert_6	Task: NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Dataset subset: NABench enhancer assays (NABench split)	0.097 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(enhancer)
Configuration: Dnabert_6	Task: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Dataset subset: NABench mRNA assays (NABench split)	0.481 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(mRNA)
Configuration: Dnabert_6	Task: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Dataset subset: NABench promoter assays (NABench split)	0.409 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Scored supervised, random cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(promoter)
Configuration: Dnabert_6	Task: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.302 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Scored supervised, random cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(ribozyme)
Configuration: Dnabert_6	Task: NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Dataset subset: NABench tRNA assays (NABench split)	0.425 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Dnabert_6 on NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(tRNA)