| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 9.7 Runtime (alignment stage; 30x Illumina) minute · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Alignment (min)', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 37.8 CPU time (total, FASTQ to VCF; 30x Illumina) hour · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Core-hours', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 1.1 Compute cost (Azure on-demand price, FASTQ to VCF; 30x Illumina) us-dollar · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'On-demand ($)', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 1.4 Runtime (preprocessing stage; 30x Illumina) minute · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Preprocessing (min)', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 0.11 Compute cost (Azure spot price, FASTQ to VCF; 30x Illumina) us-dollar · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Spot ($)', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 18.9 Runtime (total, FASTQ to VCF; 30x Illumina) minute · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Total runtime (min)', column 'DNAscope (short reads)' |
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| Configuration: Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) | Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) Dataset: 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2) | 7.8 Runtime (variant calling stage; 30x Illumina) minute · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNAscope (short reads) compute benchmark on Azure (Hu et al. 2026) model-execution-20261011-protocol-hu2026-dnascope-azure-compute Aggregation: Not reported A novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Variant calling (min)', column 'DNAscope (short reads)' |
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