Runtime (variant calling stage; 30x Illumina) of Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026) on 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2)
7.8 Runtime (variant calling stage; 30x Illumina)
Methods
- Tested configuration
- Sentieon DNAscope (short reads) on Azure HB120rs v3 (Hu et al. 2026)
- Protocol
- FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2)
- Dataset
- 30x Illumina WGS input for DNAscope (short reads) (Hu et al. 2026 Table 2)
- Procedure
- FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2)
- Evaluation
- DNAscope (short reads) compute benchmark on Azure (Hu et al. 2026)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Author-reported evaluation · source checkedA novel and accelerated method for integrated alignment and variant calling from short and long reads · Table 2, row 'Variant calling (min)', column 'DNAscope (short reads)'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- One value; number of runs not stated
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 7.8 Individual claims | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2, row 'Variant calling (min)', column 'DNAscope (short reads)' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-12T07:50:32Z author reported Audit detailsIndependent review 2026-10-12: printed value, numeric value, metric, qualifier, unit, direction, uncertainty, locator and configuration and protocol identity match the source. Transcribed, not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- A novel and accelerated method for integrated alignment and variant calling from short and long reads · Original source · Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML
Technical metadata and extraction receipts
Stable ID: model-execution-20261011-result-hu2026-dnascope-short-read-variant-calling
- metric
- runtime
- metric direction
- lower
- unit
- minute
- metric qualifier
- variant calling stage; 30x Illumina
- printed value
- 7.8
- numeric value
- 7.8
- source locator
- Table 2, row 'Variant calling (min)', column 'DNAscope (short reads)'
- missing metadata
- uncertainty: reason: unreported
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the Europe PMC article XML and matched its SHA-256. Table 2 parsed from the XML table cells with a separate review script and every cell read in the parsed output.; reviewer: claude; reviewer note: Claude (Opus 5.5) review agent reviewer-exec, independent of the extractor uc-execution; no human review claimed; reviewed at: 2026-10-12T07:50:32Z; artifact sha256: b138dd8976f01b4ff50f72669dea3a7062f564a9cb359417aad0dc72a8b6c859; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12813096/fullTextXML; note: Independent review 2026-10-12: printed value, numeric value, metric, qualifier, unit, direction, uncertainty, locator and configuration and protocol identity match the source. Transcribed, not reproduced.