ESMFold2 primary paper v1, Figure 2C Runs N’ Poses
bioRxiv preprint · 10.64898/2026.06.03.729735v1; posted 2026-06-04
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Results
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Claims
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- AlphaFold3 (MSA): family discovery-model-alphafold-3: Family AlphaFold 3 (Figure 2C Runs N’ Poses, bar label AlphaFold3 (MSA); Appendix A.2.10)
- Boltz-1 (MSA): family discovery-model-boltz: Family Boltz (Figure 2C Runs N’ Poses, bar label Boltz-1 (MSA); Appendix A.2.10)
- Chai-1 (MSA): family catalog-model-chai-1: Family Chai-1 (Figure 2C Runs N’ Poses, bar label Chai-1 (MSA); Appendix A.2.10)
- Chai-1 (single sequence): family catalog-model-chai-1: Family Chai-1 (Figure 2C Runs N’ Poses, bar label Chai-1 (single sequence); Appendix A.2.10)
- ESMFold2 (MSA, 10 loops): family discovery-model-esmfold2: Family ESMFold2 (Figure 2C Runs N’ Poses, bar label ESMFold2 (MSA, 10 loops); Appendix A.2.10)
- ESMFold2 (MSA, 20 loops): family discovery-model-esmfold2: Family ESMFold2 (Figure 2C Runs N’ Poses, bar label ESMFold2 (MSA, 20 loops); Appendix A.2.10)
- ESMFold2 (single sequence, 10 loops): family discovery-model-esmfold2: Family ESMFold2 (Figure 2C Runs N’ Poses, bar label ESMFold2 (single sequence, 10 loops); Appendix A.2.10)
- ESMFold2 (single sequence, 20 loops): family discovery-model-esmfold2: Family ESMFold2 (Figure 2C Runs N’ Poses, bar label ESMFold2 (single sequence, 20 loops); Appendix A.2.10)
- ESMFold2 Runs N’ Poses reported comparison msa: part of model-coverage-esmfold2-runs-n-poses: Part of ESMFold2 Runs N’ Poses comparison (Figure 2C right subpanel; Appendix A.2.10 Runs N’ Poses, PDF pages 5, 46–47)
- ESMFold2 Runs N’ Poses reported comparison single-sequence: part of model-coverage-esmfold2-runs-n-poses: Part of ESMFold2 Runs N’ Poses comparison (Figure 2C right subpanel; Appendix A.2.10 Runs N’ Poses, PDF pages 5, 46–47)
- ESMFold2-Fast (single sequence): family discovery-model-esmfold2: Family ESMFold2 (Figure 2C Runs N’ Poses, bar label ESMFold2-Fast (single sequence); Appendix A.2.10)
Models, benchmarks and other records
Configurations (11)
Benchmarks (1)
Protocols (2)
Dataset subsets (1)
Evaluations (11)
- AlphaFold3 (MSA) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- Boltz-1 (MSA) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- Chai-1 (MSA) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- Chai-1 (single sequence) on ESMFold2 Runs N’ Poses reported comparison single-sequence: Runs N’ Poses ligand pass rate (single sequence)
- ESMFold2 (MSA, 10 loops) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- ESMFold2 (MSA, 20 loops) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- ESMFold2 (single sequence, 10 loops) on ESMFold2 Runs N’ Poses reported comparison single-sequence: Runs N’ Poses ligand pass rate (single sequence)
- ESMFold2 (single sequence, 20 loops) on ESMFold2 Runs N’ Poses reported comparison single-sequence: Runs N’ Poses ligand pass rate (single sequence)
- ESMFold2-Fast (single sequence) on ESMFold2 Runs N’ Poses reported comparison single-sequence: Runs N’ Poses ligand pass rate (single sequence)
- OpenFold3 (MSA) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
- Protenix-v1 (MSA) on ESMFold2 Runs N’ Poses reported comparison msa: Runs N’ Poses ligand pass rate (MSA)
Evidence
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Evidence table
Inspect claims, sources and review details
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13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact SHA-256 aacaf8d2c9af44cf148138b195175f2751295197bd5e3352ca6f1387059a7127 Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://www.biorxiv.org/content/10.64898/2026.06.03.729735v1.full.pdf Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-23T11:22:04.378019+00:00 Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://www.biorxiv.org/content/10.64898/2026.06.03.729735v1 Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Venue bioRxiv preprint Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version 10.64898/2026.06.03.729735v1; posted 2026-06-04 Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Pinned primary artifact. Review is limited to the cited rows. Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Facets: areas1 values
| ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record ID model-coverage-esmfold2-2026-v1-source Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record type source Source metadata | ESMFold2 primary paper v1, Figure 2C Runs N’ Poses No field-specific location recorded Version: 10.64898/2026.06.03.729735v1; posted 2026-06-04 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Pinned primary artifact. Review is limited to the cited rows.
Technical metadata and extraction receipts
Stable ID: model-coverage-esmfold2-2026-v1-source
- areas
- proteins-complexes
- url
- https://www.biorxiv.org/content/10.64898/2026.06.03.729735v1
- artifact url
- https://www.biorxiv.org/content/10.64898/2026.06.03.729735v1.full.pdf
- artifact sha256
- aacaf8d2c9af44cf148138b195175f2751295197bd5e3352ca6f1387059a7127
- retrieved at
- 2026-09-23T11:22:04.378019+00:00
- venue
- bioRxiv preprint
- version
- 10.64898/2026.06.03.729735v1; posted 2026-06-04