pfmbench primary benchmark evidence

What this source contributed

Records in this release that cite this source. A record can cite several sources.

• 12 configurations
• 1 benchmark
• 12 tasks
• 12 dataset subsets
• 141 evaluations
• 141 results
• 17 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Claims

Statements this source supports, each with where in the source it was checked.

• ESM-2: family ESM-2: Family ESM-2 (Section 3.3 Supported Models; Table 2 model identity and Table 3 named row)
• ESM-C: family ESMC: Family ESMC (Section 3.3 Supported Models; Table 2 model identity and Table 3 named row)
• ESM3: family ESM3: Family ESM3 (Section 3.3 Supported Models; Table 2 model identity and Table 3 named row)
• PFMBench against ProteinGym on ESM-2 and ESM3: ProteinGym zero-shot scores differ: Discrepancy review investigating (The outlier and consensus results of discrepancy-4db3e5d24233e19b as published at https://benchmarks.rewirebio.io/contested/discrepancy-4db3e5d24233e19b/ (release 2026-10-23-968c8720eea6))
• PFMBench against ProteinGym on ESM-2 and ESM3: ProteinGym zero-shot scores differ: Discrepancy review investigating (The outlier and consensus results of discrepancy-4db3e5d24233e19b as published at https://benchmarks.rewirebio.io/contested/discrepancy-4db3e5d24233e19b/ (release 2026-10-23-968c8720eea6))
• PFMBench ANTI-RES: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Antibiotic resistance))
• PFMBench BINDING-DB: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(BindingDB))
• PFMBench CLONING-CLF: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Cloning CLF))
• PFMBench DEEPLOC2: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(DeepLoc2 Multi))
• PFMBench DEEPSOL: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(DeepSol))
• PFMBench EC: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Enzyme Commission))
• PFMBench MAT-PROD: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Material production))
• PFMBench METAL-ION: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Metal ion binding))
• PFMBench PDB-BIND: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(PDBbind))
• PFMBench PROTEINGYM-ZS: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(ProteinGym))
• PFMBench SEC-STRUCT: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(Secondary structure))
• PFMBench STABILITY: part of discovery-benchmark-pfmbench: Part of PFMBench (Table 1, row(TAPE_Stability))

Models, benchmarks and other records

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.