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Task

PFMBench METAL-ION: Metal ion binding

Metal ion binding. Scored with Accuracy on Metal ion binding. Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.

12 evaluations · 12 results

Overview

Metal ion binding. Scored with Accuracy on Metal ion binding. Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.

PFMBench METAL-ION: Metal ion binding

accuracy (fraction) · Higher values are better.

PFMBench METAL-ION: Metal ion binding · Metal ion binding (PFMBench split)

Evidence origin: Author-reported evaluation.

pfmbench primary benchmark evidence · Table 1, row(Metal ion binding)
  • The metric differs by task, taken from Table 1, so these figures cannot be averaged into one score.
  • Table 3 scores come from adapter fine-tuning; the ProteinGym figure is zero-shot and is not comparable to them.
Comparison details and limitations

Every method PFMBench reports on Metal ion binding, scored with Accuracy on Metal ion binding.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 12 of 12 matching rows.

Tested configuration
00.250.50.751
Reported score
  1. ProTrek0.804
  2. PGLM0 .74513
  3. ProtT50.721
  4. ProstT50.721
  5. ESM-20.712
  6. ProtGPT20.712
  7. SaProt0.71
  8. ESM30.703
  9. VenusPLM0.702
  10. ESM-C0.702
  11. DPLM0.701
  12. ProtST0.515

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Benchmarks

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-pfmbench
Individual claims		pfmbench primary benchmark evidence

Original source ↗

Table 1, row(Metal ion binding)

Version: 2506.14796v1
Retrieved: 2026-09-16T21:06:29.716004+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-pfmbench

Claim: pfmbench-association-metal-ion

Source artifact SHA-256: 59c7bbb888e8e91f33c1e2cabfde062c32381d6ca727d23b6655c977aabf97a2

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: pfmbench-task-metal-ion

areas
proteins-complexes
tasks
Metal ion binding
metric
Accuracy
metric direction
higher
dataset
Metal ion binding
protocol
Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.
source locator
Table 1, row(Metal ion binding)
comparison panels
id: pfmbench-panel-metal-ion; title: PFMBench METAL-ION: Metal ion binding; protocol id: pfmbench-task-metal-ion; dataset id: pfmbench-dataset-metal-ion-binding; metric: accuracy; unit: fraction; direction: higher; result ids: pfmbench-result-esm-2-metal-ion-accuracy; pfmbench-result-venusplm-metal-ion-accuracy; pfmbench-result-esm-c-metal-ion-accuracy; pfmbench-result-protgpt2-metal-ion-accuracy; pfmbench-result-pglm-metal-ion-accuracy; pfmbench-result-prott5-metal-ion-accuracy; pfmbench-result-dplm-metal-ion-accuracy; pfmbench-result-saprot-metal-ion-accuracy; pfmbench-result-prostt5-metal-ion-accuracy; pfmbench-result-protst-metal-ion-accuracy; pfmbench-result-esm3-metal-ion-accuracy; pfmbench-result-protrek-metal-ion-accuracy; source ids: expansion-p3-pfmbench; source locator: Table 1, row(Metal ion binding); context: Every method PFMBench reports on Metal ion binding, scored with Accuracy on Metal ion binding.; caveats: Author-reported numbers, source checked but not independently reproduced.; The metric differs by task, taken from Table 1, so these figures cannot be averaged into one score.; Table 3 scores come from adapter fine-tuning; the ProteinGym figure is zero-shot and is not comparable to them.; review: method: automated_source_review; date: 2026-09-18
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