Talos diagnosis recovery and workload: RGP trio
Recovery of previously known diagnoses detectable by standardized GATK/GATK-SV/GATK-gCNV calling; default versus strict filtering. Singleton mode removes parental data; full mode uses available family structure. Unresolved families remain in workload denominators.
Overview
Recovery of previously known diagnoses detectable by standardized GATK/GATK-SV/GATK-gCNV calling; default versus strict filtering. Singleton mode removes parental data; full mode uses available family structure. Unresolved families remain in workload denominators.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
2 recorded evaluations, 10 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.
Results
Results are available, but no reviewed comparison panel is linked in this release.
All evaluations
2 evaluations · 10 results. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Talos default filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 519 candidate_variants count · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: total Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, default, Candidate variants |
| Configuration: Talos default filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 1.3 candidates_per_proband variants per proband · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: table ratio Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, default, Candidates per proband |
| Configuration: Talos default filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 11 candidates_per_recovered_diagnosis variants per diagnosis · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: table ratio Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, default, Candidates per diagnoses |
| Configuration: Talos default filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 47 recovered_known_diagnoses count · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, default, Diagnoses |
| Configuration: Talos default filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 87% known_diagnosis_recovery percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, default, Diagnoses (%) |
| Configuration: Talos strict phenotype-match filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 335 candidate_variants count · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: total Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, strict, Candidate variants |
| Configuration: Talos strict phenotype-match filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 0.9 candidates_per_proband variants per proband · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: table ratio Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, strict, Candidates per proband |
| Configuration: Talos strict phenotype-match filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 7.4 candidates_per_recovered_diagnosis variants per diagnosis · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: table ratio Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, strict, Candidates per diagnoses |
| Configuration: Talos strict phenotype-match filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 45 recovered_known_diagnoses count · unknown Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, strict, Diagnoses |
| Configuration: Talos strict phenotype-match filtering, 2026 study | Protocol: Talos diagnosis recovery and workload: RGP trio Dataset: Talos RGP trio evaluation cohort | 83% known_diagnosis_recovery percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Talos Table 1: complete evaluation cohort outcomes · Table 1, RGP trio, strict, Diagnoses (%) |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.
- Author-reported evaluations
- 2
Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
Proposed control: requires review
Protocol-specific valid geometric or structural control
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
Proposed control: requires review
Upstream conventional structural reference with matched templates and cutoffs
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-30-e37e3ab1284d. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Applicable tests and references
Applicability is distinct from a completed evaluation.
- Talos default filtering as comparator for phenotype restriction · source_supported
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of uc-clinical-20260930-benchmark-talos-study Individual claims | Automated reanalysis of genomic data for rare disease diagnostics at scale Table1; Results comparison with other tools and iterative reanalysis Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Medicine 2026 final publication, 24 June 2026 | source checked automated source review · 2026-09-30 Audit detailsTranscription from inspected primary source. No execution, independent replication or human scientific review. Field: Claim: uc-clinical-20260930-membership-talos-rgp-trio-protocol Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: part of uc-clinical-20260930-benchmark-talos-study Individual claims | Talos Table 1: complete evaluation cohort outcomes Table1; Results comparison with other tools and iterative reanalysis Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Table 1 in final 2026 article | source checked automated source review · 2026-09-30 Audit detailsTranscription from inspected primary source. No execution, independent replication or human scientific review. Field: Claim: uc-clinical-20260930-membership-talos-rgp-trio-protocol Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-30-e37e3ab1284d · Record review: source checked
1 source records and release history
- Talos Table 1: complete evaluation cohort outcomes · Original source · Table 1 in final 2026 article
Technical metadata and extraction receipts
Stable ID: uc-clinical-20260930-talos-rgp-trio-protocol
- areas
- dna-genomes
- contexts
- clinical_research
- protocol
- Recovery of previously known diagnoses detectable by standardized GATK/GATK-SV/GATK-gCNV calling; default versus strict filtering. Singleton mode removes parental data; full mode uses available family structure. Unresolved families remain in workload denominators.
- review
- method: automated_source_review; reviewer: Codex clinical coverage worker; date: 2026-09-30; note: Transcription from inspected primary source. No execution, independent replication or human scientific review.; source id: uc-clinical-20260930-source-talos-table1
- source locator
- Table 1, RGP trio
- limitations
- Not end-to-end diagnostic sensitivity: only callable known diagnoses form recovery denominator.; Not a prospective diagnostic yield comparison.; Candidates per proband is a table ratio; narrative calls fractional values medians and abstract uses average. No median reinterpretation.; Exact software and annotation snapshots remain unextracted.