rewirebio.iobenchmarks
Protocol

PRIME ACE2 binding regression, Random split over RBD mutants, R²

Supervised regression of ACE2 binding from protein representations under the random split over rbd mutants, scored by R².

21 evaluations · 21 results

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

21 recorded evaluations, 21 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.

View coverage and remaining gaps across all benchmarks

Results

Results are available, but no reviewed comparison panel is linked in this release.

All evaluations

21 evaluations · 21 results. Different protocols are not a single leaderboard.

Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R² · Dataset: SARS-CoV-2 RBD mutant binding and expression measurements

Sorted by R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configurationR² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)R² (ACE2 binding; Random split over RBD mutants; one-hot mean representation)
ESM-C 300M, the CLS token embedding, fine-tuned (PRIME)Evaluation0.7647 ± 0.08 (best in column)Not reportedNot reportedNot reportedNot reported
ESM-2 650M, the CLS token embedding, fine-tuned (PRIME)Evaluation0.7584 ± 0.11Not reportedNot reportedNot reportedNot reported
ESM-C 600M, the CLS token embedding, fine-tuned (PRIME)Evaluation0.7552 ± 0.07Not reportedNot reportedNot reportedNot reported
ESM-2 8M, the CLS token embedding, fine-tuned (PRIME)Evaluation0.5897 ± 0.03Not reportedNot reportedNot reportedNot reported
ESM-2 150M, the CLS token embedding, fine-tuned (PRIME)Evaluation0.5836 ± 0.28Not reportedNot reportedNot reportedNot reported
ESM-2 150M, the CLS token embedding, not fine-tuned (PRIME)EvaluationNot reported0.5788 ± 0.14Not reportedNot reportedNot reported
ESM-2 150M, the mean over residue embeddings, fine-tuned (PRIME)EvaluationNot reportedNot reported0.7461 ± 0.08Not reportedNot reported
ESM-2 150M, the mean over residue embeddings, not fine-tuned (PRIME)EvaluationNot reportedNot reportedNot reported0.6713 ± 0.13Not reported
ESM-2 650M, the CLS token embedding, not fine-tuned (PRIME)EvaluationNot reported0.7694 ± 0.13 (best in column)Not reportedNot reportedNot reported
ESM-2 650M, the mean over residue embeddings, fine-tuned (PRIME)EvaluationNot reportedNot reported0.8189 ± 0.10Not reportedNot reported
ESM-2 650M, the mean over residue embeddings, not fine-tuned (PRIME)EvaluationNot reportedNot reportedNot reported0.7981 ± 0.13 (best in column)Not reported
ESM-2 8M, the CLS token embedding, not fine-tuned (PRIME)EvaluationNot reported0.5876 ± 0.07Not reportedNot reportedNot reported
ESM-2 8M, the mean over residue embeddings, fine-tuned (PRIME)EvaluationNot reportedNot reported0.6225 ± 0.07Not reportedNot reported
ESM-2 8M, the mean over residue embeddings, not fine-tuned (PRIME)EvaluationNot reportedNot reportedNot reported0.6794 ± 0.02Not reported
ESM-C 300M, the CLS token embedding, not fine-tuned (PRIME)EvaluationNot reported0.5869 ± 0.15Not reportedNot reportedNot reported
ESM-C 300M, the mean over residue embeddings, fine-tuned (PRIME)EvaluationNot reportedNot reported0.8057 ± 0.06Not reportedNot reported
ESM-C 300M, the mean over residue embeddings, not fine-tuned (PRIME)EvaluationNot reportedNot reportedNot reported0.7155 ± 0.07Not reported
ESM-C 600M, the CLS token embedding, not fine-tuned (PRIME)EvaluationNot reported0.6616 ± 0.12Not reportedNot reportedNot reported
ESM-C 600M, the mean over residue embeddings, fine-tuned (PRIME)EvaluationNot reportedNot reported0.8346 ± 0.07 (best in column)Not reportedNot reported
ESM-C 600M, the mean over residue embeddings, not fine-tuned (PRIME)EvaluationNot reportedNot reportedNot reported0.7355 ± 0.12Not reported
One-hot mean representation (PRIME)EvaluationNot reportedNot reportedNot reportedNot reported0.1136 ± 0.03
All 21 result rows with coverage, uncertainty and sources
Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: ESM-2 150M, the CLS token embedding, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.5836 ± 0.28 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)
unitless · higher

Uncertainty: SD 0.28

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 150M CLS finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 150M' / 'CLS' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 150M, the CLS token embedding, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.5788 ± 0.14 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)
unitless · higher

Uncertainty: SD 0.14

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 150M CLS frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 150M' / 'CLS' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 150M, the mean over residue embeddings, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7461 ± 0.08 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)
unitless · higher

Uncertainty: SD 0.08

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 150M Mean finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 150M' / 'Mean' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 150M, the mean over residue embeddings, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.6713 ± 0.13 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)
unitless · higher

Uncertainty: SD 0.13

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 150M Mean frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 150M' / 'Mean' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 650M, the CLS token embedding, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7584 ± 0.11 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)
unitless · higher

Uncertainty: SD 0.11

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 650M CLS finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 650M' / 'CLS' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 650M, the CLS token embedding, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7694 ± 0.13 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)
unitless · higher

Uncertainty: SD 0.13

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 650M CLS frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 650M' / 'CLS' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 650M, the mean over residue embeddings, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.8189 ± 0.10 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)
unitless · higher

Uncertainty: SD 0.10

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 650M Mean finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 650M' / 'Mean' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 650M, the mean over residue embeddings, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7981 ± 0.13 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)
unitless · higher

Uncertainty: SD 0.13

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 650M Mean frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 650M' / 'Mean' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 8M, the CLS token embedding, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.5897 ± 0.03 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)
unitless · higher

Uncertainty: SD 0.03

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 8M CLS finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 8M' / 'CLS' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 8M, the CLS token embedding, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.5876 ± 0.07 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)
unitless · higher

Uncertainty: SD 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 8M CLS frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 8M' / 'CLS' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 8M, the mean over residue embeddings, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.6225 ± 0.07 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)
unitless · higher

Uncertainty: SD 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 8M Mean finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 8M' / 'Mean' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-2 8M, the mean over residue embeddings, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.6794 ± 0.02 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)
unitless · higher

Uncertainty: SD 0.02

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-2 8M Mean frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-2 8M' / 'Mean' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 300M, the CLS token embedding, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7647 ± 0.08 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)
unitless · higher

Uncertainty: SD 0.08

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 300M CLS finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 300M' / 'CLS' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 300M, the CLS token embedding, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.5869 ± 0.15 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)
unitless · higher

Uncertainty: SD 0.15

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 300M CLS frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 300M' / 'CLS' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 300M, the mean over residue embeddings, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.8057 ± 0.06 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)
unitless · higher

Uncertainty: SD 0.06

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 300M Mean finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 300M' / 'Mean' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 300M, the mean over residue embeddings, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7155 ± 0.07 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)
unitless · higher

Uncertainty: SD 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 300M Mean frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 300M' / 'Mean' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 600M, the CLS token embedding, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7552 ± 0.07 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, fine-tuned)
unitless · higher

Uncertainty: SD 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 600M CLS finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 600M' / 'CLS' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 600M, the CLS token embedding, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.6616 ± 0.12 R² (ACE2 binding; Random split over RBD mutants; the CLS token embedding, frozen)
unitless · higher

Uncertainty: SD 0.12

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 600M CLS frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 600M' / 'CLS' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 600M, the mean over residue embeddings, fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.8346 ± 0.07 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, fine-tuned)
unitless · higher

Uncertainty: SD 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 600M Mean finetuned: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 600M' / 'Mean' / '✓', columns 'Random Split' / 'Binding' / 'R²'
Configuration: ESM-C 600M, the mean over residue embeddings, not fine-tuned (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.7355 ± 0.12 R² (ACE2 binding; Random split over RBD mutants; the mean over residue embeddings, frozen)
unitless · higher

Uncertainty: SD 0.12

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ESM-C 600M Mean frozen: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'ESM-C 600M' / 'Mean' / '×', columns 'Random Split' / 'Binding' / 'R²'
Configuration: One-hot mean representation (PRIME)Protocol: PRIME ACE2 binding regression, Random split over RBD mutants, R²
Dataset: SARS-CoV-2 RBD mutant binding and expression measurements
0.1136 ± 0.03 R² (ACE2 binding; Random split over RBD mutants; one-hot mean representation)
unitless · higher

Uncertainty: SD 0.03

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

One-Hot Mean: ACE2 binding R², Random split over RBD mutants

lit-protein-20261011-prime-protocol-random-binding-r2

Aggregation: Not reported

PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space · Table 1, row 'One-Hot Mean', columns 'Random Split' / 'Binding' / 'R²'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Methods and evaluation design

Procedure, tasks and evaluated configurations

Recorded evaluations

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Baseline coverage

Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.

0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.

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Author-reported evaluations
21

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Null control

Proposed control: requires review

Training-set mean where supervised fitting is permitted

Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.

This is a suggested selection rule, not a validated method or a measured score.

Conventional reference

Proposed control: requires review

Simple features with train-only ridge regression

Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.

This is a suggested selection rule, not a validated method or a measured score.

Protocol coverage CSV (gzip) · Model evaluation matrix (gzip) · Source table (gzip) · Release and checksums (gzip)

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Technical metadata and extraction receipts

Stable ID: lit-protein-20261011-prime-protocol-random-binding-r2

areas
protein-function
contexts
research
protocol
Representations of RBD mutants are fed to a supervised regression head and scored on held-out data under the random split over rbd mutants. Binding and expression are predicted jointly by one multi-task fully connected network over the representations (Methods, Input features), so the two targets are not independent runs.
metric
coefficient-of-determination
metric direction
higher
unit
unitless
metric qualifier
ACE2 binding; Random split over RBD mutants
version
As published 2026
source locator
Table 1, columns 'Random Split' / 'Binding' / 'R²'
limitations
None recorded
uncertainty reporting
printed: mean plus or minus standard deviation across random seeds; runs: Five folds (Fig. 1C) and three seeds (Methods) are stated; which the printed spread is taken over is not
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