OHE MSAT | configuration

Overview

Supervised fitness predictor evaluated by the ProteinGym authors. The leading term is the input representation the paper's model type column gives.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

4 evaluations · 8 results. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.882 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, average over splits, MSE)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.963 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, contiguous split, MSE)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.934 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, modulo split, MSE)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.749 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, random split, MSE)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.453 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, average over splits, Spearman)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.41 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, contiguous split, Spearman)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.412 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, modulo split, Spearman)
Configuration: OHE MSAT	Task: ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split)	0.536 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source OHE MSAT on ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(MSAT), column(Supervised substitutions, random split, Spearman)

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