Configuration

structRFM

structRFM: Nucleotide foundation model.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

42 evaluations · 42 results. Different protocols are not a single leaderboard.

Sorted by Spearman (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Spearman	AUROC	MCC	NDCG (cutoff not stated)
structRFMEvaluation	NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation, NABench promoter assays (NABench split)	0.61 (best in column)	Not reported	Not reported	Not reported
structRFMEvaluation	NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation, NABench mRNA assays (NABench split)	0.596	Not reported	Not reported	Not reported
structRFMEvaluation	NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ, NABench SELEX assays (NABench split)	0.592	Not reported	Not reported	Not reported
structRFMEvaluation	NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation, NABench tRNA assays (NABench split)	0.588	Not reported	Not reported	Not reported
structRFMEvaluation	NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation, NABench aptamer assays (NABench split)	0.541	Not reported	Not reported	Not reported
structRFMEvaluation	NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.539	Not reported	Not reported	Not reported
structRFMEvaluation	NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation, NABench ribozyme assays (NABench split)	0.531	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation, NABench tRNA assays (NABench split)	0.375	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation, NABench aptamer assays (NABench split)	0.281	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot, NABench mRNA assays (NABench split)	0.276	Not reported	Not reported	Not reported
structRFMEvaluation	NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation, NABench enhancer assays (NABench split)	0.275	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot, NABench tRNA assays (NABench split)	0.273	Not reported	Not reported	Not reported
structRFMEvaluation	NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.227	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation, NABench ribozyme assays (NABench split)	0.217	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	0.196	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	0.196	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot, NABench aptamer assays (NABench split)	0.181	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	0.181	Not reported	Not reported	Not reported
structRFMEvaluation	NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.173	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	0.161	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot, NABench ribozyme assays (NABench split)	0.149	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation, NABench mRNA assays (NABench split)	0.136	Not reported	Not reported	Not reported
structRFMEvaluation	NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.13	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot, NABench enhancer assays (NABench split)	0.113	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	0.113	Not reported	Not reported	Not reported
structRFMEvaluation	NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot, NABench promoter assays (NABench split)	0.104	Not reported	Not reported	Not reported
structRFMEvaluation	NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ, NABench SELEX assays (NABench split)	0.097	Not reported	Not reported	Not reported
structRFMEvaluation	NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	0.089	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation, NABench enhancer assays (NABench split)	0.087	Not reported	Not reported	Not reported
structRFMEvaluation	NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation, NABench promoter assays (NABench split)	0.033	Not reported	Not reported	Not reported
structRFMEvaluation	NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC, NABench deep mutational scanning assays (NABench split)	Not reported	0.469	Not reported	Not reported
structRFMEvaluation	NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	0.065 (best in column)	Not reported
structRFMEvaluation	NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	Not reported	0.327 (best in column)
structRFMEvaluation	NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, NABench SELEX assays (NABench split)	Not reported	0.552	Not reported	Not reported
structRFMEvaluation	NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC, NABench SELEX assays (NABench split)	Not reported	Not reported	0.058	Not reported
structRFMEvaluation	NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG, NABench SELEX assays (NABench split)	Not reported	Not reported	Not reported	0.266
structRFMEvaluation	NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	Not reported	0.595	Not reported	Not reported
structRFMEvaluation	NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	Not reported	0.522	Not reported	Not reported
structRFMEvaluation	NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	Not reported	0.614	Not reported	Not reported
structRFMEvaluation	NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	Not reported	0.581	Not reported	Not reported
structRFMEvaluation	NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	Not reported	0.549	Not reported	Not reported
structRFMEvaluation	NABench ZS-AUC-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	Not reported	0.619 (best in column)	Not reported	Not reported

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NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: nabench-method-structrfm

areas: rna-transcriptomes
source locator: Table 7, row(structRFM)
missing metadata: checkpoint revision: reason: unreported; parameters: reason: unextracted
provenance note: Nucleotide foundation model evaluated by the NABench authors under their fitness prediction protocol.

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: structRFM	Task: NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Dataset subset: NABench aptamer assays (NABench split)	0.281 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(aptamer)
Configuration: structRFM	Task: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Dataset subset: NABench enhancer assays (NABench split)	0.087 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(enhancer)
Configuration: structRFM	Task: NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Dataset subset: NABench mRNA assays (NABench split)	0.136 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(mRNA)
Configuration: structRFM	Task: NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Dataset subset: NABench promoter assays (NABench split)	0.033 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(promoter)
Configuration: structRFM	Task: NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.217 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(ribozyme)
Configuration: structRFM	Task: NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Dataset subset: NABench tRNA assays (NABench split)	0.375 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(tRNA)
Configuration: structRFM	Task: NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.227 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Contiguous cross validation Spearman ρ)
Configuration: structRFM	Task: NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.173 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Few-shot Spearman ρ)
Configuration: structRFM	Task: NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.539 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Random cross validation Spearman ρ)
Configuration: structRFM	Task: NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.469 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Zero-shot AUC)
Configuration: structRFM	Task: NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.13 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Zero-shot Spearman ρ)
Configuration: structRFM	Task: NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.065 MCC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Zero-shot MCC)
Configuration: structRFM	Task: NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Dataset subset: NABench deep mutational scanning assays (NABench split)	0.327 NDCG (cutoff not stated) unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(structRFM), column(Zero-shot NDCG)
Configuration: structRFM	Task: NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Dataset subset: NABench aptamer assays (NABench split)	0.181 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Scored few-shot across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(aptamer)
Configuration: structRFM	Task: NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Dataset subset: NABench enhancer assays (NABench split)	0.113 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Scored few-shot across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(enhancer)
Configuration: structRFM	Task: NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Dataset subset: NABench mRNA assays (NABench split)	0.276 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Scored few-shot across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(mRNA)
Configuration: structRFM	Task: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Dataset subset: NABench promoter assays (NABench split)	0.104 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Scored few-shot across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(promoter)
Configuration: structRFM	Task: NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Dataset subset: NABench ribozyme assays (NABench split)	0.149 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Scored few-shot across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(ribozyme)
Configuration: structRFM	Task: NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Dataset subset: NABench tRNA assays (NABench split)	0.273 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Scored few-shot across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(tRNA)
Configuration: structRFM	Task: NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Dataset subset: NABench aptamer assays (NABench split)	0.541 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(aptamer)
Configuration: structRFM	Task: NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Dataset subset: NABench enhancer assays (NABench split)	0.275 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(enhancer)
Configuration: structRFM	Task: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Dataset subset: NABench mRNA assays (NABench split)	0.596 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(mRNA)
Configuration: structRFM	Task: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Dataset subset: NABench promoter assays (NABench split)	0.61 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Scored supervised, random cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(promoter)
Configuration: structRFM	Task: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.531 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Scored supervised, random cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(ribozyme)
Configuration: structRFM	Task: NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Dataset subset: NABench tRNA assays (NABench split)	0.588 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source structRFM on NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(tRNA)