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LucaVirus

LucaVirus: Nucleotide foundation model.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

43 evaluations · 43 results. Different protocols are not a single leaderboard.

Sorted by Spearman (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Spearman	AUROC	MCC	NDCG (cutoff not stated)
LucaVirusEvaluation	NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ, NABench SELEX assays (NABench split)	0.693 (best in column)	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation, NABench mRNA assays (NABench split)	0.651	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ, NABench SELEX assays (NABench split)	0.605	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation, NABench promoter assays (NABench split)	0.588	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation, NABench tRNA assays (NABench split)	0.565	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation, NABench ribozyme assays (NABench split)	0.529	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.526	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation, NABench aptamer assays (NABench split)	0.493	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot, NABench aptamer assays (NABench split)	0.294	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot, NABench mRNA assays (NABench split)	0.291	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation, NABench ribozyme assays (NABench split)	0.276	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation, NABench enhancer assays (NABench split)	0.26	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation, NABench mRNA assays (NABench split)	0.224	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot, NABench ribozyme assays (NABench split)	0.224	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation, NABench tRNA assays (NABench split)	0.215	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.206	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.204	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	0.168	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation, NABench promoter assays (NABench split)	0.164	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation, NABench aptamer assays (NABench split)	0.139	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot, NABench promoter assays (NABench split)	0.131	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot, NABench tRNA assays (NABench split)	0.121	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	0.103	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ, NABench deep mutational scanning assays (NABench split)	0.093	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ, NABench SELEX assays (NABench split)	0.078	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation, NABench enhancer assays (NABench split)	0.075	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	0.06	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	0.055	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	0.037	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot, NABench enhancer assays (NABench split)	0.033	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-CORR-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	0.033	Not reported	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC, NABench deep mutational scanning assays (NABench split)	Not reported	0.467	Not reported	Not reported
LucaVirusEvaluation	NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	0.049 (best in column)	Not reported
LucaVirusEvaluation	NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG, NABench deep mutational scanning assays (NABench split)	Not reported	Not reported	Not reported	0.343 (best in column)
LucaVirusEvaluation	NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, NABench SELEX assays (NABench split)	Not reported	0.541	Not reported	Not reported
LucaVirusEvaluation	NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC, NABench SELEX assays (NABench split)	Not reported	Not reported	0.043	Not reported
LucaVirusEvaluation	NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG, NABench SELEX assays (NABench split)	Not reported	Not reported	Not reported	0.288
LucaVirusEvaluation	NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot, NABench aptamer assays (NABench split)	Not reported	0.563 (best in column)	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shot, NABench enhancer assays (NABench split)	Not reported	0.527	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shot, NABench mRNA assays (NABench split)	Not reported	0.531	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shot, NABench promoter assays (NABench split)	Not reported	0.523	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot, NABench ribozyme assays (NABench split)	Not reported	0.556	Not reported	Not reported
LucaVirusEvaluation	NABench ZS-AUC-TRNA: Fitness prediction on tRNA assays, zero-shot, NABench tRNA assays (NABench split)	Not reported	0.549	Not reported	Not reported

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NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: nabench-method-lucavirus

areas: rna-transcriptomes
source locator: Table 7, row(LucaVirus)
missing metadata: checkpoint revision: reason: unreported; parameters: reason: unextracted
provenance note: Nucleotide foundation model evaluated by the NABench authors under their fitness prediction protocol.

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: LucaVirus	Task: NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Dataset subset: NABench aptamer assays (NABench split)	0.139 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(aptamer)
Configuration: LucaVirus	Task: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Dataset subset: NABench enhancer assays (NABench split)	0.075 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(enhancer)
Configuration: LucaVirus	Task: NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Dataset subset: NABench mRNA assays (NABench split)	0.224 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(mRNA)
Configuration: LucaVirus	Task: NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Dataset subset: NABench promoter assays (NABench split)	0.164 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(promoter)
Configuration: LucaVirus	Task: NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.276 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(ribozyme)
Configuration: LucaVirus	Task: NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Dataset subset: NABench tRNA assays (NABench split)	0.215 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench CCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, contiguous cross validation Scored supervised, contiguous cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(tRNA)
Configuration: LucaVirus	Task: NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.206 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-CCV: Overall fitness prediction on NABench deep mutational scanning assays, Contiguous cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Contiguous cross validation Spearman ρ)
Configuration: LucaVirus	Task: NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.204 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-FS: Overall fitness prediction on NABench deep mutational scanning assays, Few-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Few-shot Spearman ρ)
Configuration: LucaVirus	Task: NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.526 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-RCV: Overall fitness prediction on NABench deep mutational scanning assays, Random cross validation Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Random cross validation Spearman ρ)
Configuration: LucaVirus	Task: NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.467 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-ZS-AUC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot AUC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Zero-shot AUC)
Configuration: LucaVirus	Task: NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Dataset subset: NABench deep mutational scanning assays (NABench split)	0.093 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-ZS-CORR: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot Spearman ρ Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Zero-shot Spearman ρ)
Configuration: LucaVirus	Task: NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Dataset subset: NABench deep mutational scanning assays (NABench split)	0.049 MCC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-ZS-MCC: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot MCC Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Zero-shot MCC)
Configuration: LucaVirus	Task: NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Dataset subset: NABench deep mutational scanning assays (NABench split)	0.343 NDCG (cutoff not stated) unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench DMS-ZS-NDCG: Overall fitness prediction on NABench deep mutational scanning assays, Zero-shot NDCG Aggregated by the NABench authors across NABench deep mutational scanning assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 6, row(LucaVirus), column(Zero-shot NDCG)
Configuration: LucaVirus	Task: NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Dataset subset: NABench aptamer assays (NABench split)	0.294 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Scored few-shot across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(aptamer)
Configuration: LucaVirus	Task: NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Dataset subset: NABench enhancer assays (NABench split)	0.033 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Scored few-shot across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(enhancer)
Configuration: LucaVirus	Task: NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Dataset subset: NABench mRNA assays (NABench split)	0.291 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Scored few-shot across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(mRNA)
Configuration: LucaVirus	Task: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Dataset subset: NABench promoter assays (NABench split)	0.131 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Scored few-shot across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(promoter)
Configuration: LucaVirus	Task: NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Dataset subset: NABench ribozyme assays (NABench split)	0.224 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Scored few-shot across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(ribozyme)
Configuration: LucaVirus	Task: NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Dataset subset: NABench tRNA assays (NABench split)	0.121 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench FS-CORR-TRNA: Fitness prediction on tRNA assays, few-shot Scored few-shot across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(tRNA)
Configuration: LucaVirus	Task: NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Dataset subset: NABench aptamer assays (NABench split)	0.493 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench aptamer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(aptamer)
Configuration: LucaVirus	Task: NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Dataset subset: NABench enhancer assays (NABench split)	0.26 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Scored supervised, random cross validation across the NABench enhancer assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(enhancer)
Configuration: LucaVirus	Task: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Dataset subset: NABench mRNA assays (NABench split)	0.651 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench mRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(mRNA)
Configuration: LucaVirus	Task: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Dataset subset: NABench promoter assays (NABench split)	0.588 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Scored supervised, random cross validation across the NABench promoter assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(promoter)
Configuration: LucaVirus	Task: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Dataset subset: NABench ribozyme assays (NABench split)	0.529 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Scored supervised, random cross validation across the NABench ribozyme assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(ribozyme)
Configuration: LucaVirus	Task: NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Dataset subset: NABench tRNA assays (NABench split)	0.565 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LucaVirus on NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Scored supervised, random cross validation across the NABench tRNA assays. Aggregation: Not reported NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(tRNA)