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Task

ProteinBench BB-LENGTH-300-QUALITY-SCTM: length 300, Quality scTM

length 300, Quality scTM. Scored with scTM on Designed backbones at fixed lengths. Unconditional backbone design at a fixed sequence length. Values are the median over repeated runs.

9 evaluations · 9 results

Overview

length 300, Quality scTM. Scored with scTM on Designed backbones at fixed lengths. Unconditional backbone design at a fixed sequence length. Values are the median over repeated runs.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.

ProteinBench BB-LENGTH-300-QUALITY-SCTM: length 300, Quality scTM

sctm (score) · Higher values are better.

ProteinBench BB-LENGTH-300-QUALITY-SCTM: length 300, Quality scTM · Designed backbones at fixed lengths (ProteinBench split)

Evidence origin: Author-reported evaluation.

proteinbench primary benchmark evidence · Table 3, column(length 300, Quality scTM ↑)
  • Many of these metrics are better when lower, including scRMSD, perplexity and binding energy. The direction comes from the arrow in the paper's own header.
  • Rows such as Native PDBs and RAbD are the natural reference the authors include for scale, not a competing method.
Comparison details and limitations

Every method ProteinBench reports on length 300, Quality scTM, scored with scTM on Designed backbones at fixed lengths.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-19. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 9 of 9 matching rows.

Tested configuration
0.1980.4390.680.9211.16
Reported score
  1. Native PDBs0.97 ± 0.10
  2. RFdiffusion0.96 ± 0.15
  3. FrameFlow0.92 ± 0.15
  4. Chroma0.87 ± 0.13
  5. FrameDiff(latest)0.87 ± 0.12
  6. FoldFlow1(ot)0.54 ± 0.12
  7. FoldFlow1(sfm)0.45 ± 0.11
  8. FoldFlow1(base)0.43 ± 0.09
  9. Genie0.27 ± 0.02

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Benchmarks

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-proteinbench
Individual claims		proteinbench primary benchmark evidence

Original source ↗

Table 3, column(length 300, Quality scTM ↑)

Version: 2409.06744v1
Retrieved: 2026-09-16T21:07:13.231727+00:00

source checked

automated source review · 2026-09-19

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-proteinbench

Claim: proteinbench-association-bb-length-300-quality-sctm

Source artifact SHA-256: 4334d636223ad42bfb9ae68aae03f5a255c29ba1cebe7b8f9588fb3b9b5453b2

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: proteinbench-task-bb-length-300-quality-sctm

areas
proteins-complexes
tasks
length 300, Quality scTM
metric
scTM
metric direction
higher
dataset
Designed backbones at fixed lengths
protocol
Unconditional backbone design at a fixed sequence length. Values are the median over repeated runs.
source locator
Table 3, column(length 300, Quality scTM ↑)
comparison panels
id: proteinbench-panel-bb-length-300-quality-sctm; title: ProteinBench BB-LENGTH-300-QUALITY-SCTM: length 300, Quality scTM; protocol id: proteinbench-task-bb-length-300-quality-sctm; dataset id: proteinbench-dataset-designed-backbones-at-fixed-lengths; metric: sctm; unit: score; direction: higher; result ids: proteinbench-result-native-pdbs-bb-length-300-quality-sctm-sctm; proteinbench-result-rfdiffusion-bb-length-300-quality-sctm-sctm; proteinbench-result-frameflow-bb-length-300-quality-sctm-sctm; proteinbench-result-chroma-bb-length-300-quality-sctm-sctm; proteinbench-result-framediff-latest-bb-length-300-quality-sctm-sctm; proteinbench-result-foldflow1-sfm-bb-length-300-quality-sctm-sctm; proteinbench-result-foldflow1-base-bb-length-300-quality-sctm-sctm; proteinbench-result-foldflow1-ot-bb-length-300-quality-sctm-sctm; proteinbench-result-genie-bb-length-300-quality-sctm-sctm; source ids: expansion-p3-proteinbench; source locator: Table 3, column(length 300, Quality scTM ↑); context: Every method ProteinBench reports on length 300, Quality scTM, scored with scTM on Designed backbones at fixed lengths.; caveats: Author-reported numbers, source checked but not independently reproduced.; Many of these metrics are better when lower, including scRMSD, perplexity and binding energy. The direction comes from the arrow in the paper's own header.; Rows such as Native PDBs and RAbD are the natural reference the authors include for scale, not a competing method.; review: method: automated_source_review; date: 2026-09-19
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