Source

MFASS v2 pinned rewire artifacts

bee9133b83f3aedaf2bbb9013f1875515845607e

What this source contributed

Records in this release that cite this source. A record can cite several sources.

3 configurations
1 pipeline
1 task
2 protocols
1 dataset
1 baseline
4 evaluations
12 results
6 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
Corrected k-mer / position baseline	AUROC	0.7779498064677238 unitless	MFASS v2 eligible assay cohort	Corrected k-mer / position baseline on MFASS v2
Corrected k-mer / position baseline	Average precision	0.2864167459589237 fraction	MFASS v2 eligible assay cohort	Corrected k-mer / position baseline on MFASS v2
Corrected k-mer / position baseline	Precision at 100	0.61 fraction	MFASS v2 eligible assay cohort	Corrected k-mer / position baseline on MFASS v2
DNABERT-2 117M · frozen pair embeddings	AUROC	0.5500324040216661 unitless	MFASS v2 eligible assay cohort	DNABERT-2 117M · frozen pair embeddings on MFASS v2
DNABERT-2 117M · frozen pair embeddings	Average precision	0.04508654312652131 fraction	MFASS v2 eligible assay cohort	DNABERT-2 117M · frozen pair embeddings on MFASS v2
DNABERT-2 117M · frozen pair embeddings	Precision at 100	0.03 fraction	MFASS v2 eligible assay cohort	DNABERT-2 117M · frozen pair embeddings on MFASS v2
Pangolin · mask=False	AUROC	0.8756851300560864 unitless	MFASS v2 eligible assay cohort	Pangolin · mask=False on MFASS v2
Pangolin · mask=False	Average precision	0.3887617543064248 fraction	MFASS v2 eligible assay cohort	Pangolin · mask=False on MFASS v2
Pangolin · mask=False	Precision at 100	0.65 fraction	MFASS v2 eligible assay cohort	Pangolin · mask=False on MFASS v2
SpliceAI 1.3.1	AUROC	0.8055241740253153 unitless	MFASS v2 eligible assay cohort	SpliceAI 1.3.1 on MFASS v2
SpliceAI 1.3.1	Average precision	0.2986855472760137 fraction	MFASS v2 eligible assay cohort	SpliceAI 1.3.1 on MFASS v2
SpliceAI 1.3.1	Precision at 100	0.64 fraction	MFASS v2 eligible assay cohort	SpliceAI 1.3.1 on MFASS v2

Claims

Statements this source supports, each with where in the source it was checked.

DNABERT-2 117M · frozen pair embeddings: uses model DNABERT-2: Uses model DNABERT-2 (Pinned rewire benchmarks/mfass/README.md and corresponding results JSON, config; official model README)
MFASS v1 (superseded): evaluates task MFASS splice-variant prioritisation: Evaluates task MFASS splice-variant prioritisation (Pinned benchmarks/mfass/README.md: Correction; v1 archived as superseded evidence)
MFASS v2: evaluates task MFASS splice-variant prioritisation: Evaluates task MFASS splice-variant prioritisation (Pinned benchmarks/mfass/README.md: Dataset; Cohort reconciliation; Split)
Pangolin · mask=False: uses model Pangolin: Uses model Pangolin (Pinned rewire benchmarks/mfass/README.md and corresponding results JSON, config; official model README)
Relevance of MFASS v2 to "Prioritise variants for splicing experiments": Assessed by MFASS v2 (rewire-mfass-v2-source: results/baseline-kmer-position-v2.json; matched specialist and DNABERT2 result files; training-prior.report.json; rewire-local-20260921-source-mfass-prior: results/baseline-kmer-position-v2.json; matched specialist and DNABERT2 result files; training-prior.report.json)
SpliceAI 1.3.1: uses model SpliceAI: Uses model SpliceAI (Pinned rewire benchmarks/mfass/README.md and corresponding results JSON, config; official model README)

Models, benchmarks and other records

Configurations (3)

Pipelines (1)

DNABERT-2 117M · frozen pair embeddings

Tasks (1)

MFASS splice-variant prioritisation

Protocols (2)

Datasets (1)

MFASS v2 eligible assay cohort

Baselines (1)

Corrected k-mer / position baseline measured comparator

Evaluations (4)

Evidence

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Evidence table

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11 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Retrieved at 2026-09-16T10:50:02Z Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Url https://github.com/timini/rewire-benchmarks/tree/bee9133b83f3aedaf2bbb9013f1875515845607e Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Version bee9133b83f3aedaf2bbb9013f1875515845607e Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Description No value recorded Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Search facets None recorded Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `facets` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Record ID rewire-mfass-v2-source Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `id` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Record type source Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `kind` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Name MFASS v2 pinned rewire artifacts Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash
Sources None recorded Source metadata	MFASS v2 pinned rewire artifacts Original source ↗ No field-specific location recorded Version: bee9133b83f3aedaf2bbb9013f1875515845607e Retrieved: 2026-09-16T10:50:02Z	catalogued No individual claim review recorded Audit details Field: `source_ids` Source artifact SHA-256: `a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d` Hash scope: Local imported data/benchmark-runs/mfass-v2.json; not the upstream repository or result-file hash

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: rewire-mfass-v2-source

url: https://github.com/timini/rewire-benchmarks/tree/bee9133b83f3aedaf2bbb9013f1875515845607e
version: bee9133b83f3aedaf2bbb9013f1875515845607e
retrieved at: 2026-09-16T10:50:02Z
artifact sha256: a3af693afc070b39b334e359beed7f9affd76f7456a4f9264e2d1e9dab26111d

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