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Advancing the accuracy of clathrin protein prediction through multi-source protein language models

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DOI: 10.1038/s41598-025-08510-4 Original source

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13 configurations
1 task
1 protocol
1 dataset
13 evaluations
78 results
1 evidence claim

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Clathrin independent test: selected-embedding classifiers (clathrin protein classification): links:evaluates_task:reported-task-786c09824e9bf5: Evaluates task clathrin protein classification (Table 3: ACC, Clathrin independent test: selected-embedding classifiers)

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Evaluations (13)

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12238356/fullTextXML Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Doi 10.1038/s41598-025-08510-4 Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Hash scope Exact retrieved primary paper artifact bytes. Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Retrieved at 2026-09-17T07:56:20.050842+00:00 Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Review method 1 values automated-source-review Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Review: scope Source identification and table transcription; no independent experimental reproduction. Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.scope` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12238356/fullTextXML Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Version journal full text in PMC Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Description Primary reference; inspect retrieval status and review scope. Source metadata	Advancing the accuracy of clathrin protein prediction through multi-source protein language models Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-17T07:56:20.050842+00:00	catalogued No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Stable ID: part2-clathrin-plm-2025

url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12238356/fullTextXML
doi: 10.1038/s41598-025-08510-4
version: journal full text in PMC
retrieved at: 2026-09-17T07:56:20.050842+00:00
artifact sha256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12238356/fullTextXML
hash scope: Exact retrieved primary paper artifact bytes.
review: scope: Source identification and table transcription; no independent experimental reproduction.; method: automated-source-review

Related records

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Model or configuration	Metric	Value	Dataset	Evaluation
ADA	Accuracy	0.877 fraction	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
ADA	AUROC	0.924 unitless	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
ADA	F1	0.902 fraction	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
ADA	MCC	0.739 unitless	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
ADA	Recall	0.918 fraction	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
ADA	Specificity	0.812 fraction	Clathrin independent test: selected-embedding classifiers	ADA: Clathrin independent test: selected-embedding classifiers
DT	Accuracy	0.715 fraction	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
DT	AUROC	0.726 unitless	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
DT	F1	0.779 fraction	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
DT	MCC	0.384 unitless	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
DT	Recall	0.818 fraction	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
DT	Specificity	0.551 fraction	Clathrin independent test: selected-embedding classifiers	DT: Clathrin independent test: selected-embedding classifiers
ET	Accuracy	0.888 fraction	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
ET	AUROC	0.959 unitless	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
ET	F1	0.909 fraction	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
ET	MCC	0.764 unitless	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
ET	Recall	0.909 fraction	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
ET	Specificity	0.855 fraction	Clathrin independent test: selected-embedding classifiers	ET: Clathrin independent test: selected-embedding classifiers
KNN	Accuracy	0.916 fraction	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
KNN	AUROC	0.905 unitless	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
KNN	F1	0.933 fraction	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
KNN	MCC	0.822 unitless	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
KNN	Recall	0.955 fraction	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
KNN	Specificity	0.855 fraction	Clathrin independent test: selected-embedding classifiers	KNN: Clathrin independent test: selected-embedding classifiers
LDA	Accuracy	0.866 fraction	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LDA	AUROC	0.945 unitless	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LDA	F1	0.891 fraction	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LDA	MCC	0.717 unitless	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LDA	Recall	0.891 fraction	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LDA	Specificity	0.826 fraction	Clathrin independent test: selected-embedding classifiers	LDA: Clathrin independent test: selected-embedding classifiers
LR	Accuracy	0.877 fraction	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
LR	AUROC	0.948 unitless	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
LR	F1	0.897 fraction	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
LR	MCC	0.747 unitless	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
LR	Recall	0.873 fraction	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
LR	Specificity	0.884 fraction	Clathrin independent test: selected-embedding classifiers	LR: Clathrin independent test: selected-embedding classifiers
MLP	Accuracy	0.933 fraction	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
MLP	AUROC	0.968 unitless	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
MLP	F1	0.946 fraction	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
MLP	MCC	0.858 unitless	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
MLP	Recall	0.955 fraction	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
MLP	Specificity	0.899 fraction	Clathrin independent test: selected-embedding classifiers	MLP: Clathrin independent test: selected-embedding classifiers
NB	Accuracy	0.827 fraction	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
NB	AUROC	0.868 unitless	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
NB	F1	0.846 fraction	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
NB	MCC	0.668 unitless	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
NB	Recall	0.773 fraction	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
NB	Specificity	0.913 fraction	Clathrin independent test: selected-embedding classifiers	NB: Clathrin independent test: selected-embedding classifiers
PLM-CLA	Accuracy	0.961 fraction	Clathrin independent test: selected-embedding classifiers	PLM-CLA: Clathrin independent test: selected-embedding classifiers
PLM-CLA	AUROC	0.997 unitless	Clathrin independent test: selected-embedding classifiers	PLM-CLA: Clathrin independent test: selected-embedding classifiers