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Clathrin independent test: selected-embedding classifiers

Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.

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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

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Evaluation results

13 evaluations · 78 results. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: DTProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.715 ACC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DT: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column ACC; XML row2 column2
Configuration: RFProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.884 SP
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RF: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column SP; XML row7 column4
Configuration: PLM-CLAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.917 MCC
dimensionless · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PLM-CLA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column MCC; XML row14 column5
Configuration: PLSProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.69 MCC
dimensionless · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PLS: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLS, column MCC; XML row4 column5
Configuration: PLSProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.845 SN
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PLS: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLS, column SN; XML row4 column3
Configuration: LRProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.747 MCC
dimensionless · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

LR: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row LR, column MCC; XML row8 column5
Configuration: ADAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.877 ACC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ADA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column ACC; XML row5 column2
Configuration: NBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.773 SN
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NB: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row NB, column SN; XML row3 column3
Configuration: LRProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.884 SP
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

LR: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row LR, column SP; XML row8 column4
Configuration: DTProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.551 SP
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DT: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column SP; XML row2 column4
Configuration: ADAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.739 MCC
dimensionless · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ADA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column MCC; XML row5 column5
Configuration: ADAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.918 SN
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ADA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column SN; XML row5 column3
Configuration: PLM-CLAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.949 F1
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PLM-CLA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column F1; XML row14 column6
Configuration: RFProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.912 F1
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RF: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column F1; XML row7 column6
Configuration: DTProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.726 AUC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DT: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column AUC; XML row2 column7
Configuration: SVMProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.942 F1
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SVM: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row SVM, column F1; XML row13 column6
Configuration: RFProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.894 ACC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RF: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column ACC; XML row7 column2
Configuration: RFProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.959 AUC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RF: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column AUC; XML row7 column7
Configuration: SVMProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.964 SN
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SVM: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row SVM, column SN; XML row13 column3
Configuration: MLPProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.946 F1
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

MLP: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row MLP, column F1; XML row12 column6
Configuration: ETProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.764 MCC
dimensionless · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ET: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ET, column MCC; XML row10 column5
Configuration: NBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.868 AUC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NB: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row NB, column AUC; XML row3 column7
Configuration: PLM-CLAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.961 ACC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PLM-CLA: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column ACC; XML row14 column2
Configuration: XGBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.877 ACC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

XGB: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row XGB, column ACC; XML row11 column2
Configuration: XGBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)
Dataset: Clathrin independent test: selected-embedding classifiers
0.956 AUC
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

XGB: Clathrin independent test: selected-embedding classifiers

Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.

Aggregation: Not reported

Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row XGB, column AUC; XML row11 column7

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Dataset and evaluation context

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6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.reported_population
Not reported
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

missing or unspecified

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Field: attributes.reported_population

Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

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attributes.source_locator
Table 3: ACC, Clathrin independent test: selected-embedding classifiers
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.split
CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.subset
Clathrin independent test: selected-embedding classifiers
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

not individually reviewed

No individual claim review recorded

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Field: attributes.subset

Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

Hash scope: Exact retrieved primary paper artifact bytes.

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description
Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

not individually reviewed

No individual claim review recorded

Audit details

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Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name
Clathrin independent test: selected-embedding classifiers
Context-only references
Advancing the accuracy of clathrin protein prediction through multi-source protein language models

Original source ↗

Table 3: ACC, Clathrin independent test: selected-embedding classifiers

Version: journal full text in PMC
Retrieved: 2026-09-17T07:56:20.050842+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 2edc86b25707c1b737d26117093ce8d856e79cc5d0b335f27c1c341f887f1c7e

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Release 2026-09-29-06401fd5b220 · Record review: needs review

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Technical metadata and extraction receipts

Stable ID: paper-dataset-a1836de18515f3ab55

areas
proteins-complexes
tasks
clathrin protein classification
split
CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.
subset
Clathrin independent test: selected-embedding classifiers
reported population
Not reported
source locator
Table 3: ACC, Clathrin independent test: selected-embedding classifiers
missing metadata
manifest: unextracted; scored count: unreported
entity classification
review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: part2-clathrin-plm-2025; source locator: Table 3: ACC, Clathrin independent test: selected-embedding classifiers; ambiguities: None recorded
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