Source

BarcodeBERT: transformers for biodiversity analyses

2026 · journal full text in PMC · Peer-reviewed

DOI: 10.1093/bioadv/vbag054 Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

1 configuration
2 tasks
1 dataset
1 baseline
1 evaluation
1 result
1 evidence claim

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
BarcodeBERT (4–4-4)	Accuracy	78.5 percent	DNA barcodes of unseen species	BarcodeBERT (4–4-4): unseen-species genus classification

Claims

Statements this source supports, each with where in the source it was checked.

Reported accuracy for BarcodeBERT (4–4-4): Printed value 78.5 (Table 1, BarcodeBERT (4–4-4) row, unseen-species genus-level 1-NN Acc (%) column)

Models, benchmarks and other records

Configurations (1)

BarcodeBERT (4–4-4)

Tasks (2)

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact retrieved at 2026-09-16T10:38:57.558051+00:00 Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_retrieved_at` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact SHA-256 493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13008329/fullTextXML Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Doi 10.1093/bioadv/vbag054 Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Missing metadata: licence: reason unextracted Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.missing_metadata.licence.reason` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Publication status peer_reviewed Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-09-15T23:33:26Z Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Scope decision included Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.scope_decision` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Url https://pmc.ncbi.nlm.nih.gov/articles/PMC13008329/ Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Version journal full text in PMC Source metadata	BarcodeBERT: transformers for biodiversity analyses Original source ↗ No field-specific location recorded Version: journal full text in PMC Retrieved: 2026-09-16T10:38:57.558051+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.

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Technical metadata and extraction receipts

Stable ID: barcodebert-2026

areas: dna-genomes
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13008329/
version: journal full text in PMC
retrieved at: 2026-09-15T23:33:26Z
doi: 10.1093/bioadv/vbag054
publication status: peer_reviewed
year: 2026
artifact sha256: 493f9fe70b483780ba76d51ccf217d3ca83539c82b89917fd3ccebe2b6eb831d
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13008329/fullTextXML
artifact retrieved at: 2026-09-16T10:38:57.558051+00:00
scope decision: included
missing metadata: licence: reason: unextracted

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