Kraken2
Evaluation results
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No evaluations linked in this release.
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Applicable tests and references
Applicability is distinct from a completed evaluation.
- Held-out-clade classification · Proposed association
- Phage / pathogen reads · Proposed association
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
56 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.applicability proposed Context-only references | BarcodeBERT: transformers for biodiversity analyses No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.applicability proposed Context-only references | Kraken2 official resource No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.applicability proposed Context-only references | kraken2: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | nbrg-ppcu/prokbert: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8670ae92b816cff158a0b85647a8dea122e251eb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | DerrickWood/kraken2: docs/MANUAL.markdown No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8c190b1b668825935dbf6dee5f969227dc8269bb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | DerrickWood/kraken2: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8c190b1b668825935dbf6dee5f969227dc8269bb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | DerrickWood/kraken2: docs/MANUAL.html No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8c190b1b668825935dbf6dee5f969227dc8269bb | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.baseline_type established_method Context-only references | BarcodeBERT: transformers for biodiversity analyses No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type established_method Context-only references | Kraken2 official resource No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type established_method Context-only references | kraken2: Journal full-text XML No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: discovered
7 source records and release history
- Kraken2 official resource · Original source · Not reported
- DerrickWood/kraken2: README.md · Original source · 8c190b1b668825935dbf6dee5f969227dc8269bb
- DerrickWood/kraken2: docs/MANUAL.markdown · Original source · 8c190b1b668825935dbf6dee5f969227dc8269bb
- DerrickWood/kraken2: docs/MANUAL.html · Original source · 8c190b1b668825935dbf6dee5f969227dc8269bb
- kraken2: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
- BarcodeBERT: transformers for biodiversity analyses · Original source · journal full text in PMC
- nbrg-ppcu/prokbert: README.md · Original source · 8670ae92b816cff158a0b85647a8dea122e251eb
Technical metadata and extraction receipts
Stable ID: catalog-baseline-kraken2
- areas
- microbes-communities
- baseline type
- established_method
- applicability
- proposed
- requirements
- Public classifier; database build/version must be pinned separately.
- missing metadata
- exact protocol: not_yet_extracted
- entity classification
- review date: 2026-09-17; rationale: This record defines a proposed comparison/reference role. Its established_method value remains a baseline-type facet; the underlying method/model/library is represented by a linked entity where verified. A baseline role is not itself a measured result or a new scientific architecture.; source ids: evidence-official-40f46dc4b9fcc306773b; evidence-official-33fe0374c8ebbc2c7294; evidence-official-9ba2b6dc494c7b6df951; evidence-official-1f756fefa823dd402b0f; barcodebert-2026; evidence-official-2efbfaba5a1c09f4f7fa; source locator: docs/MANUAL.markdown: Introduction, Standard Kraken 2 Database, Classification and Confidence scoring | Methods: dataset partition and 1-NN probing; Results: unseen-species genus prediction | ProkBERT README: phage identification and downstream tasks. The combined task label is catalogue scope, not a claim that phage identity establishes pathogenicity.; ambiguities: Applicability is proposed. This classification does not certify that the baseline was run, was matched to every linked protocol, or constitutes an experimental ceiling.
Related records
- model: Kraken2
- applicable to: Held-out-clade classification
- applicable to: Phage / pathogen reads