Protocol

WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2)

Wall-clock minutes for the DeepVariant calling stage on ten WGS samples, CPU-only versus Parabricks on three GPU types versus DRAGEN.

4 evaluations · 40 results

Overview

Wall-clock minutes for the DeepVariant calling stage on ten WGS samples, CPU-only versus Parabricks on three GPU types versus DRAGEN.

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4 recorded evaluations, 40 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.

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4 evaluations · 40 results. Different protocols are not a single leaderboard.

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Sources and history

Release 2026-10-09-8cc1db47c7f9 · Record review: source checked

2 source records and release history

Benchmarking accelerated next-generation sequencing analysis pipelines · Original source · Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML
Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Original source · 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip

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Technical metadata and extraction receipts

Stable ID: model-execution-20261009-protocol-samarakoon2025-dv

areas: dna-genomes
contexts: clinical_research
protocol: Variant calling with DeepVariant (CPU or Parabricks); not run on DRAGEN. Real (wall-clock) time measured per stage from FASTQ input (Methods 2.6).
version: Supplementary Table S3 sub-table 'b.2). Variant calling via DV'
unit: minute
metric: runtime
limitations: One run per sample and configuration; no repeats or variance printed.; Hardware differs between columns (CPU cluster, two GCP VMs and an HPC GPU node), so differences mix software and hardware.; CPU-only nodes were shared with other users; GCP VMs ran in a multi-tenant environment (Table S2 notes).; DRAGEN has no DeepVariant stage; its column prints NA and has no evaluation.
denominator: 10
missing metadata: replicates: reason: unreported
source locator: Supplementary Table S3, sub-table 'b.2). Variant calling via DV'

Related records

Suggest a correction

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	338 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12778', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	252 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12812', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	313 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12829', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	291 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12843', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	429 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12877', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	435 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12878', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	488 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12889', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	428 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12890', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	465 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12891', column 'CPU' (PDF page text)
Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	465 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12892', column 'CPU' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	5.98 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12778', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	4.38 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12812', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	7.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12829', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	5.18 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12843', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	15.3 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12877', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	16.9 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12878', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	17.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12889', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	13.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12890', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	17.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12891', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	17.7 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA A100 GPUs (UiO HPC), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12892', column 'A100' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	12.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12778', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	9.58 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12812', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	17.1 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12829', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	12 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12843', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	30 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12877', column 'L4' (PDF page text)