Input FASTQ used for the runtime benchmark in Samarakoon et al. 2025.
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21 evaluations · 195 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 338 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12778', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 252 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12812', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 313 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12829', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 291 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12843', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 429 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12877', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 435 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12878', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 488 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12889', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 428 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12890', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 465 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12891', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 465 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12892', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 614 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12778', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 557 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12812', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 756 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12829', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 603 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12843', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1150 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12877', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1110 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12878', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1350 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12889', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1290 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12890', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1090 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12891', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1150 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12892', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 334 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12778', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 267 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12812', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 508 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12829', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 354 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12843', column 'CPU' (PDF page text) |
| Configuration: CPU-only best-practice pipeline on AMD EPYC 7702 (UiO HPC) (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 1270 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12877', column 'CPU' (PDF page text) |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.assay Illumina paired-end WGS FASTQ (Platinum pedigree CEPH; 1000 Genomes phase 3 low coverage); GRCh38 no-alt analysis set reference Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.assay Illumina paired-end WGS FASTQ (Platinum pedigree CEPH; 1000 Genomes phase 3 low coverage); GRCh38 no-alt analysis set reference Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.population NA12812 9.35x; NA12778 9.82x; NA12843 10.14x; NA12829 13.63x; NA12890 42.58x; NA12891 47.09x; NA12878 47.55x; NA12877 49.88x; NA12892 50.50x; NA12889 52.80x Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.population NA12812 9.35x; NA12778 9.82x; NA12843 10.14x; NA12829 13.63x; NA12890 42.58x; NA12891 47.09x; NA12878 47.55x; NA12877 49.88x; NA12892 50.50x; NA12889 52.80x Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.source_locator Supplementary Table S1; Methods 2.1 Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Supplementary Table S1; Methods 2.1 Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.split All ten samples; one run per sample and configuration Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split All ten samples; one run per sample and configuration Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| description Input FASTQ used for the runtime benchmark in Samarakoon et al. 2025. Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Input FASTQ used for the runtime benchmark in Samarakoon et al. 2025. Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S1; Methods 2.1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: model-execution-20261009-data-samarakoon2025-wgs-10