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1 evaluation · 10 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 21.9 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12778', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 20.3 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12812', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 33.8 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12829', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 23.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12843', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 64 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12877', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 60.3 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12878', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 66.9 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12889', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 56.1 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12890', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 62 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12891', column 'DRAGEN' (PDF page text) |
| Configuration: Illumina DRAGEN v4.2 on DRAGEN server V2 (Samarakoon et al. 2025) | Protocol: WGS germline pipeline wall-clock, total of read mapping and HaplotypeCaller or DRAGEN GSVC (Samarakoon et al. 2025 Table S3c) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage | 65.2 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemodel-execution-20261009-protocol-samarakoon2025-total Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', row 'NA12892', column 'DRAGEN' (PDF page text) |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
model-execution-20261009-protocol-samarakoon2025-total
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
36 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Not reported Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.comparison.aggregation One value per sample Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation One value per sample Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.comparison.budget One run per sample and configuration; no fixed hardware budget, hardware is part of each configuration (Supplementary Table S2) Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget One run per sample and configuration; no fixed hardware budget, hardware is part of each configuration (Supplementary Table S2) Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.comparison.dataset_version Not reported Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
| attributes.comparison.inputs Paired-end WGS FASTQ, GRCh38 Context-only references | Benchmarking accelerated next-generation sequencing analysis pipelines Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Paired-end WGS FASTQ, GRCh38 Context-only references | Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) Supplementary Table S3 'c.) Total processing time: Read mapping & HC or DRAGEN GSVC', column 'DRAGEN' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF. The publisher zip vbaf085_supplementary_data.zip that contains it has SHA-256 a828608e459ec1fe57828e9b4fbce228e9507b8686eecedac323f45fd4c3cc07. Retrieved inside the Europe PMC supplementaryFiles zip, which is assembled per request; the publisher's inner zip and the PDF it holds are pinned. Archive member: Publication-ready_Supplementary materials-20250404.pdf |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: model-execution-20261009-eval-samarakoon2025-dragen42-server-v2-total