Configuration

NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)

L4 column of Supplementary Table S3.

Overview

L4 column of Supplementary Table S3.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

4 evaluations · 39 results. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	12.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12778', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	9.58 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12812', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	17.1 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12829', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	12 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12843', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	30 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12877', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	30 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12878', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	33.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12889', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	26.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12890', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	28.8 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12891', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, DeepVariant calling stage (Samarakoon et al. 2025 Table S3b.2) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	31.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), DeepVariant calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-dv Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.2). Variant calling via DV', row 'NA12892', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	5.92 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12778', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	5.63 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12812', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	9.17 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12829', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	7.05 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12843', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	20 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12877', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	20.7 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12878', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	18.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12889', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	21.3 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12890', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	19.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12891', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025 Table S3b.1) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	23.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), HaplotypeCaller or DRAGEN GSVC calling stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-hc Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'b.1) Variant calling via HC or DRAGEN GSVC', row 'NA12892', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	26 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), read mapping stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12778', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	19.1 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), read mapping stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12812', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	45.1 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), read mapping stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12829', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	30.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), read mapping stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12843', column 'L4' (PDF page text)
Configuration: NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2) (Samarakoon et al. 2025)	Protocol: WGS germline pipeline wall-clock, read mapping stage (Samarakoon et al. 2025 Table S3a) Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage	108 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NVIDIA Parabricks on 4 NVIDIA L4 GPUs (GCP G2), read mapping stage (Samarakoon et al. 2025) model-execution-20261009-protocol-samarakoon2025-mapping Aggregation: Not reported Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S3 'a) Read mapping', row 'NA12877', column 'L4' (PDF page text)

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Benchmarking accelerated next-generation sequencing analysis pipelines · Original source · Bioinformatics Advances 5(1):vbaf085, published 2025-05-15; PMC12092081 full-text XML
Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Original source · 'Publication-ready_Supplementary materials-20250404.pdf' inside vbaf085_supplementary_data.zip

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Stable ID: model-execution-20261009-config-samarakoon2025-parabricks-4xl4

areas: dna-genomes
contexts: clinical_research
method types: conventional_pipeline
foundation model eligible: false
reported name: L4
protocol: Parabricks fq2bam, ApplyBQSR, HaplotypeCaller or DeepVariant
hardware: description: 4 NVIDIA L4 (24 GB, 96 GB GPU memory in total), 192 GB RAM, GPFS, Google Cloud G2 VM, no NVLink; host CPU per GPU type not stated (Table S2 lists AMD EPYC 7702 for the Parabricks pipeline); Table S2 lists 192 GB memory, its notes say G2 machines with L4 GPUs have 196 GB
source locator: Supplementary Table S2; Methods 2.2-2.5; Table S3 column header
missing metadata: version: reason: conflicting; note: Methods 2.3 states Parabricks version 4.3.0-1; Supplementary Table S4 calls 4.1.0-1 'the version implemented in our Parabricks pipeline', and its 4.1.0-1 values equal the Table S3 b.2 H100 values.

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