k-mer count random forest
Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
Overview
Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
4 evaluations · 4 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: 3mer_random_forest | Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt | 0.616 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3mer_random_forest random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C2; row 3mer_random_forest; S7–S8 MPRA correlation plots |
| Configuration: 4mer_random_forest | Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt | 0.647 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source4mer_random_forest random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C3; row 4mer_random_forest; S7–S8 MPRA correlation plots |
| Configuration: 3mer_random_forest | Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt | 0.732 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3mer_random_forest random-50nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B2; row 3mer_random_forest; S7–S8 MPRA correlation plots |
| Configuration: 4mer_random_forest | Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt | 0.75 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source4mer_random_forest random-50nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B3; row 4mer_random_forest; S7–S8 MPRA correlation plots |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
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How it works, versions and access
Versions and evaluated configurations
- 3mer_random_forest · variant of
- 4mer_random_forest · variant of
Strengths, limitations and unresolved questions
Evidence
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Evidence table
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Sources and history
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
2 source records and release history
- FramePool 2021 primary article · Original source · 2021 journal article XML; PMC8136849.1
- FramePool Supplementary Table S4 · Original source · 2021 published S4 XLSX
Technical metadata and extraction receipts
Stable ID: uc20260930-method-k-mer-count-random-forest
- areas
- rna-transcriptomes
- source locator
- S1/S4 Table; Methods Framepool model and Model training; S7–S8 figure captions
- review
- method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.
- entity level
- method
- identity scope
- Family/method identity only; no undocumented checkpoint equivalence.
Related records
- variant of: 3mer_random_forest
- variant of: 4mer_random_forest