k-mer count random forest: description
Description of k-mer count random forest
Random forest whose input is a fixed-length vector of the sequence's 3-mer or 4-mer counts, with no reading-frame information, trained on the same MPRA training set as FramePool50.
Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | FramePool 2021 primary article uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field description Context-only references | FramePool Supplementary Table S4 uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | FramePool 2021 primary article uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | FramePool Supplementary Table S4 uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Context-only references | FramePool 2021 primary article uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Context-only references | FramePool Supplementary Table S4 uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Random forest whose input is a fixed-length vector of the sequence's 3-mer or 4-mer counts, with no reading-frame information, trained on the same MPRA training set as FramePool50. Context-only references | FramePool 2021 primary article uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Random forest whose input is a fixed-length vector of the sequence's 3-mer or 4-mer counts, with no reading-frame information, trained on the same MPRA training set as FramePool50. Context-only references | FramePool Supplementary Table S4 uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | FramePool 2021 primary article uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | FramePool Supplementary Table S4 uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information') Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- FramePool 2021 primary article · Original source · 2021 journal article XML; PMC8136849.1
- FramePool Supplementary Table S4 · Original source · 2021 published S4 XLSX
Technical metadata and extraction receipts
Stable ID: metadata-correction-07fcb29b42cc73bc0f97
- areas
- rna-transcriptomes
- field
- description
- previous value
- Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
- value
- Random forest whose input is a fixed-length vector of the sequence's 3-mer or 4-mer counts, with no reading-frame information, trained on the same MPRA training set as FramePool50.
- source locator
- uc20260930-source-framepool-2021: Methods, Random forest models ('random forest models which use k-mer counts as input features ... 3mer_random_forest and 4mer_random_forest'); S7 Fig caption ('offers no frame information')
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the 10 method and model descriptions against their sources (EVmutation, GEMME and RSALOR abstracts, the FramePool k-mer random forests, the RhoMax BLASSO text) and spot-checked the 49 mRNABench rows against Appendix A; all accurate. Licences on the 3 new sources match their Europe PMC records. At the reviewer's suggestion, the en dash printed in some checkpoint names is written as a hyphen in the descriptions.; receipt: data/omics/qa-descriptions-20261011-a/review.json
Related records
- subject: k-mer count random forest