Configuration

3mer_random_forest

Source random-forest comparator on k-mer counts; frame-aware variants count motifs separately by reading frame. All use fixed-length training.

2 evaluations · 2 results

Overview

Source random-forest comparator on k-mer counts; frame-aware variants count motifs separately by reading frame. All use fixed-length training.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

2 evaluations · 2 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: 3mer_random_forest	Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt	0.616 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 3mer_random_forest random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C2; row 3mer_random_forest; S7–S8 MPRA correlation plots
Configuration: 3mer_random_forest	Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt	0.732 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 3mer_random_forest random-50nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B2; row 3mer_random_forest; S7–S8 MPRA correlation plots

Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.

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Related profile: k-mer count random forest. This page retains the exact record and its evaluation context.

Strengths, limitations and unresolved questions

Evidence

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Evidence table

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2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-30-e37e3ab1284d
Property and statement	Original source and location	Review and provenance
Relationship: variant of uc20260930-method-k-mer-count-random-forest Individual claims	FramePool 2021 primary article Original source ↗ S1/S4 Table; Methods Framepool model and Model training; S7–S8 figure captions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 journal article XML; PMC8136849.1 Retrieved: 2026-09-30	source checked automated source review · 2026-09-30T21:40:59.576893+00:00 Audit details Field: `links:variant_of:uc20260930-method-k-mer-count-random-forest` Claim: uc20260930-config-family-4eda074ac81abca0 Source artifact SHA-256: `689af3ecab7b5a928eacc5a76d965960708cbb253fc7cdeae463b16d30ffd2e3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Relationship: variant of uc20260930-method-k-mer-count-random-forest Individual claims	FramePool Supplementary Table S4 Original source ↗ S1/S4 Table; Methods Framepool model and Model training; S7–S8 figure captions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2021 published S4 XLSX Retrieved: 2026-09-30	source checked automated source review · 2026-09-30T21:40:59.576893+00:00 Audit details Field: `links:variant_of:uc20260930-method-k-mer-count-random-forest` Claim: uc20260930-config-family-4eda074ac81abca0 Source artifact SHA-256: `38659a19f65ad0b64186d5bed88977c7d730f08ebdd38e323c908bea14cbbd89` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

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Release 2026-09-30-e37e3ab1284d · Record review: source checked

2 source records and release history

FramePool 2021 primary article · Original source · 2021 journal article XML; PMC8136849.1
FramePool Supplementary Table S4 · Original source · 2021 published S4 XLSX

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Technical metadata and extraction receipts

Stable ID: uc20260930-framepool-config-3mer-random-forest

areas: rna-transcriptomes
source locator: See linked evaluation and result locators
missing metadata: checkpoint hash: unextracted
review: method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.

Related records

variant of: k-mer count random forest
subject: 3mer_random_forest family identity
configuration: 3mer_random_forest MRL comparator
configuration: 3mer_random_forest random-25-100nt
configuration: 3mer_random_forest random-50nt

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