rewirebio.iobenchmarks
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Method

phyloP

Tests whether the substitution rate at a site departs from the neutral rate, in either direction and optionally within a particular clade of the phylogeny.

Results are recorded on linked configurations and versions of this method. Their settings and evaluations are kept separate below.

20 configurations with results

Results on linked records

This method has no results of its own in this release. 20 linked records have results. They are not assigned to the underlying method: each record keeps its own settings and evaluations, and its scores are on its own page.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

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Evidence

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Evidence table

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Description
Tests whether the substitution rate at a site departs from the neutral rate, in either direction and optionally within a particular clade of the phylogeny.
Individual claims		Abstract: Detection of nonneutral substitution rates on mammalian phylogenies (phyloP)

Original source ↗

qa-descriptions-20261011-d-source-phylop: abstractText

Version: Europe PMC core record MED/19858363 (title and abstract), Genome Research 2010
Retrieved: 2026-10-11T01:30:46Z

source checked

["automated-source-review","ai-assisted-source-review"] · 2026-10-11

Audit details

Approved. Checked the 16 Pancotti-derived descriptions word for word against PMC8921618 section 2.2, ESM therm, RaSP and ELASPIC-2 against Chu 2024, ThermoMPNN against Dieckhaus 2024, and ABYSSAL and phyloP against their abstracts; all match. Licences on the new sources are supported by Europe PMC, the PMC XML and Crossref.

Field: description

Claim: metadata-correction-38787bc94d7f95bf5d7d

Source artifact SHA-256: d25b40f27cb6adb2fa570010735d829ba99cd9dceb85e1cc011c390622b200b8

Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence.

Inspected artifact

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Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

2 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: somatic-oncogenicity-20261009-method-phylop

areas
dna-genomes
contexts
clinical_research
method types
specialist
reported name
phyloP
entity level
method
source locator
Algorithm lists of the cited sources
missing metadata
version: reason: inapplicable; note: Family record; score sources are on configurations
Related records

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