Open Problems label projection evaluation of scANVI (Seurat v3 2000 HVG) on Label projection on Pancreas (random split with label noise), Macro F1 score, scored with Macro F1 score.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: scANVI (Seurat v3 2000 HVG) | Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score Dataset subset: Pancreas (random split with label noise) (Open Problems label projection split) | 0.685 f1-macro fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHuman pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type).
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Macro F1 score Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id open-problems-task-pancreas-random-label-noise-f1-macro Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Open Problems label projection evaluation of scANVI (Seurat v3 2000 HVG) on Label projection on Pancreas (random split with label noise), Macro F1 score, scored with Macro F1 score. Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark open-problems-task-pancreas-random-label-noise-f1-macro Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset open-problems-dataset-pancreas-random-split-with-label-noise Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model open-problems-method-scanvi-seurat-v3-2000-hvg Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name scANVI (Seurat v3 2000 HVG) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score Context-only references | openproblems-label primary benchmark evidence results, dataset(pancreas_random_label_noise), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: open-problems-evaluation-scanvi-seurat-v3-2000-hvg-pancreas-random-label-noise-f1-macro