Open Problems label projection evaluation of scANVI (Seurat v3 2000 HVG) on Label projection on CeNGEN (split by batch), F1 score, scored with F1 score.
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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: scANVI (Seurat v3 2000 HVG) | Task: Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score Dataset subset: CeNGEN (split by batch) (Open Problems label projection split) | 0.224 f1 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type).
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation F1 score Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id open-problems-task-cengen-batch-f1 Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Open Problems label projection evaluation of scANVI (Seurat v3 2000 HVG) on Label projection on CeNGEN (split by batch), F1 score, scored with F1 score. Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark open-problems-task-cengen-batch-f1 Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset open-problems-dataset-cengen-split-by-batch Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model open-problems-method-scanvi-seurat-v3-2000-hvg Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name scANVI (Seurat v3 2000 HVG) on Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score Context-only references | openproblems-label primary benchmark evidence results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1) Version: v1.0.0 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: open-problems-evaluation-scanvi-seurat-v3-2000-hvg-cengen-batch-f1