GEARS Norman2019 CPA-control comparison evaluation of No Perturb on Norman2019 perturbation-response Pearson DE, scored with Pearson correlation of differential expression.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: No Perturb | Protocol: GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE Dataset subset: Norman et al.2019 perturbation data used in GEARS Supplementary Table6 (GEARS Norman2019 CPA-control comparison split) | 0.004 ± 0.006 pearson_delta_expression correlation · higher Uncertainty: type: unreported; reported spread: 0.006; note: Printed ± spread; SD/SE/CI type not established by inspected table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePredict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted. Aggregation: Not reported GEARS primary supplement, Table6 · Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted.
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15 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Trained perturbation-response models on Norman2019; CPA+KG adds an MLP over one-hop knowledge-graph neighbors (Supplementary Note5). GEARS training hyperparameters are in Supplementary Note22. No Perturb is a no-change control. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Pearson correlation of differential expression Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id gears-2023-supp-table6-task-pearson-de Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evaluation_group_id gears-2023-supp-table6-method-no-perturb-gears-2023-supp-table6-dataset-norman-et-al-2019-perturbation-data-used-in-gears-supplementary-table6-evaluation-setup Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap One source-table comparison with two metrics per evaluated configuration. No Perturb matches Table5; these are not additional independent runs. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.suite_complete false Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row No Perturb, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: gears-2023-supp-table6-evaluation-no-perturb-pearson-de