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1 evaluation · 7 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites | 0.919 AUC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1, 2OMe-LM row, AUC column |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.929
AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 7: Human RNA 2OMe sites, five-fold cross-validation AUPR |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.873
Precision fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 4: Human RNA 2OMe sites, five-fold cross-validation Precision |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.846
ACC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 2: Human RNA 2OMe sites, five-fold cross-validation ACC |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.811
Recall fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 5: Human RNA 2OMe sites, five-fold cross-validation Recall |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.695
MCC unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC |
| Configuration: 2OMe-LM | Protocol: Human RNA 2OMe sites, five-fold cross-validation (human RNA 2-prime-O-methylation site prediction) Dataset: human RNA 2OMe sites |
0.841
F1-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source2OMe-LM: human RNA 2-prime-O-methylation site prediction 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Aggregation: Not reported 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Table 1. (btaf417-T1), row 8 2OMe-LM, column 3: Human RNA 2OMe sites, five-fold cross-validation F1-score |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific predictor; checkpoint not specified Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id paper-protocol-1e891689a18fea3b65 Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Average of five validation folds of the training set. Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.subset Not reported Context-only references | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM and deep learning baseline models using 5-fold CV. a; Table 1. (btaf417-T1), row 2 GloVe + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 3 GloVe + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 4 GloVe + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 5 Word2vec + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 6 Word2vec + TextCNN + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 7 Word2Vec + Transformer + MLP, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC; Table 1. (btaf417-T1), row 8 2OMe-LM, column 8: Human RNA 2OMe sites, five-fold cross-validation MCC Version: journal full text in PMC | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: evaluation-b2-2ome-lm-2025