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Dataset subset

CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)

Dataset subset reported in RhoFold+ Nature Methods 2024: Source Data Figure 2h. Exact split manifest remains unextracted; source-table identity is retained.

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These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

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  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

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Investigate discrepancies

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  • join integrity: verification is missing
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  • metric replay: verification is missing
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Verified: Not verified

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Verified: Not verified

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Read reviewed discrepancy investigations

Evaluation results

8 evaluations · 16 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Alchemy_RNA (RhoFold)Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
5.92 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Alchemy_RNA (RhoFold) on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B7; method fig2hi!A7; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: Alchemy_RNA (RhoFold)Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
3.81 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Alchemy_RNA (RhoFold) on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H7; method fig2hi!A7; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: Alchemy_RNA2Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
4.52 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Alchemy_RNA2 on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B9; method fig2hi!A9; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: Alchemy_RNA2Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
5.8 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Alchemy_RNA2 on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H9; method fig2hi!A9; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: AlphaFold3Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.03 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Independent external evaluation · Source checked
Methods, coverage and source

AlphaFold3 on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B10; method fig2hi!A10; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: AlphaFold3Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
3.43 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Independent external evaluation · Source checked
Methods, coverage and source

AlphaFold3 on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H10; method fig2hi!A10; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: ChenProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.48 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Chen on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B8; method fig2hi!A8; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: ChenProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
2.93 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Chen on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H8; method fig2hi!A8; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: rDP (DRfold)Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
18.1 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

rDP (DRfold) on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B5; method fig2hi!A5; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: rDP (DRfold)Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
-0.43 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

rDP (DRfold) on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H5; method fig2hi!A5; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: RhoFold+Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
5.01 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Author-reported evaluation · Source checked
Methods, coverage and source

RhoFold+ on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B11; method fig2hi!A11; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: RhoFold+Protocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
4.68 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Author-reported evaluation · Source checked
Methods, coverage and source

RhoFold+ on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H11; method fig2hi!A11; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.43 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B6; method fig2hi!A6; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
2.33 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H6; method fig2hi!A6; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: Yang-bestProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
17.8 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Yang-best on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B4; method fig2hi!A4; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: Yang-bestProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
0.01 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · Source checked
Methods, coverage and source

Yang-best on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H4; method fig2hi!A4; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
description
Dataset subset reported in RhoFold+ Nature Methods 2024: Source Data Figure 2h. Exact split manifest remains unextracted; source-table identity is retained.
Context-only references
RhoFold+ Nature Methods 2024: Source Data Figure 2h

Original source ↗

No field-specific location recorded

Version: Publisher Source Data Fig. 2, DOI 10.1038/s41592-024-02487-0; retrieved 2026-09-23
Retrieved: 2026-09-23T11:23:43.985240+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 9d87837d6e72c8dafd265b9427c1cddd0223b3073eea26bcb4c6a90085a1bb04

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
Context-only references
RhoFold+ Nature Methods 2024: Source Data Figure 2h

Original source ↗

No field-specific location recorded

Version: Publisher Source Data Fig. 2, DOI 10.1038/s41592-024-02487-0; retrieved 2026-09-23
Retrieved: 2026-09-23T11:23:43.985240+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 9d87837d6e72c8dafd265b9427c1cddd0223b3073eea26bcb4c6a90085a1bb04

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Release 2026-09-29-06401fd5b220 · Record review: source checked

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Stable ID: rhofold-2024-casp15-natural-dataset-casp15-natural-rna-target-r1107

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rna-transcriptomics
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