RMSD of AlphaFold3 on CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.03 Å RMSD
Methods
- Tested configuration
- AlphaFold3
- Protocol
- RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
- Dataset subset
- CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
- Procedure
- Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.
- Evaluation
- AlphaFold3 on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
- Coverage
- 1/1 CASP15 natural RNA target scored (Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.)
- Uncertainty
- Not yet extracted
- Evidence
- Independent external evaluation · source checkedRhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B10; method fig2hi!A10; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- RMSD
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 6.03 Å Individual claims | RhoFold+ Nature Methods 2024: Source Data Figure 2h fig2hi!B10; method fig2hi!A10; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51 Version: Publisher Source Data Fig. 2, DOI 10.1038/s41592-024-02487-0; retrieved 2026-09-23 | source checked ["deterministic-table-parse","scope-review","source-hash-verification"] · 2026-09-23 independent paper Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- RhoFold+ Nature Methods 2024: Source Data Figure 2h · Original source · Publisher Source Data Fig. 2, DOI 10.1038/s41592-024-02487-0; retrieved 2026-09-23
Technical metadata and extraction receipts
Stable ID: rhofold-2024-casp15-natural-result-alphafold3-r1107-rmsd-rmsd
- areas
- rna-transcriptomes
- tasks
- R1107: RMSD
- metric
- rmsd
- metric direction
- lower
- unit
- angstrom
- printed value
- 6.03 Å
- numeric value
- 6.03
- source locator
- fig2hi!B10; method fig2hi!A10; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
- missing metadata
- denominator: reason: unextracted; seeds: reason: unreported; uncertainty: reason: unextracted
- review
- method: deterministic-table-parse; scope-review; source-hash-verification; reviewer: codex; date: 2026-09-23; artifact sha256: 9d87837d6e72c8dafd265b9427c1cddd0223b3073eea26bcb4c6a90085a1bb04; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-024-02487-0/MediaObjects/41592_2024_2487_MOESM4_ESM.xlsx; method note: complete OOXML sheet; exact raw cell tokens; shared-string decoding; worksheet relationships; primary caption and methods verified; source hash verified; no graph digitization or numerical recomputation; reviewer note: role: automated source review; note: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
- aggregation
- Source-reported selected candidate for one target; no cross-target aggregation.
- coverage
- unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.