Row labelled 'Pancreas (8k)' in the score sheets: the Pancreas subset without GEO GSE84133, which was in Geneformer pretraining. The Methods (page 9) say both the complete Pancreas dataset and its non-overlapping subset were scored 'in Additional file 1: Tables S1 and S5', which are the two score sheets, and this is their only extra Pancreas row. The workbook itself does not name the subset.
16 evaluations · 112 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.05 Adjusted rand index (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q16, metric block 'ARI', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.46 Scib asw label (cell-type ASW; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q4, metric block 'ASW', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.36 Average batch score (average batch score (mean of batch integration score and PCR batch score); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q38, metric block 'Average batch', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.22 Avg bio (AvgBIO (mean of cell-type ASW, NMI and ARI; NMI and ARI on Louvain clusters at the best-NMI resolution); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q22, metric block 'AvgBIO', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.73 Scib asw batch (batch integration score (batch ASW per cell type); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q28, metric block 'Batch integration', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.16 Normalized mutual information (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q10, metric block 'NMI', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Geneformer (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0 Scib pcr batch (principal component regression on batch; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGeneformer cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell Q33, metric block 'PCR', row 'Pancreas (8k)', column 'Geneformer' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.87 Adjusted rand index (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E16, metric block 'ARI', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.63 Scib asw label (cell-type ASW; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E4, metric block 'ASW', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.64 Average batch score (average batch score (mean of batch integration score and PCR batch score); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E38, metric block 'Average batch', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.79 Avg bio (AvgBIO (mean of cell-type ASW, NMI and ARI; NMI and ARI on Louvain clusters at the best-NMI resolution); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E22, metric block 'AvgBIO', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.83 Scib asw batch (batch integration score (batch ASW per cell type); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E28, metric block 'Batch integration', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.86 Normalized mutual information (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E10, metric block 'NMI', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: Harmony (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.45 Scib pcr batch (principal component regression on batch; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHarmony cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell E33, metric block 'PCR', row 'Pancreas (8k)', column 'Harmony' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.49 Adjusted rand index (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C16, metric block 'ARI', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.57 Scib asw label (cell-type ASW; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C4, metric block 'ASW', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.69 Average batch score (average batch score (mean of batch integration score and PCR batch score); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C38, metric block 'Average batch', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.61 Avg bio (AvgBIO (mean of cell-type ASW, NMI and ARI; NMI and ARI on Louvain clusters at the best-NMI resolution); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C22, metric block 'AvgBIO', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.9 Scib asw batch (batch integration score (batch ASW per cell type); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C28, metric block 'Batch integration', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.76 Normalized mutual information (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C10, metric block 'NMI', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: 2,000 highly variable genes (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.49 Scib pcr batch (principal component regression on batch; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHVG cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell C33, metric block 'PCR', row 'Pancreas (8k)', column 'HVG' (single-value column) |
| Configuration: scGPT blood (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.09 Adjusted rand index (Louvain clusters at best-NMI resolution versus cell-type labels; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcescGPT blood cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell M16, metric block 'ARI', row 'Pancreas (8k)', column 'scGPT blood' (single-value column) |
| Configuration: scGPT blood (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.49 Scib asw label (cell-type ASW; whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcescGPT blood cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell M4, metric block 'ASW', row 'Pancreas (8k)', column 'scGPT blood' (single-value column) |
| Configuration: scGPT blood (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.55 Average batch score (average batch score (mean of batch integration score and PCR batch score); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcescGPT blood cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell M38, metric block 'Average batch', row 'Pancreas (8k)', column 'scGPT blood' (single-value column) |
| Configuration: scGPT blood (Kedzierska et al. 2025) | Protocol: Kedzierska et al. 2025 cell embedding scoring, full embedding dimensions Dataset subset: Pancreas (8k) (Kedzierska et al. 2025) | 0.28 Avg bio (AvgBIO (mean of cell-type ASW, NMI and ARI; NMI and ARI on Louvain clusters at the best-NMI resolution); whole dataset; full embedding dimensions) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcescGPT blood cell embedding on Pancreas (8k) (Kedzierska et al. 2025) gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Aggregation: Not reported Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Additional file 1, sheet 'TableS6' cell M22, metric block 'AvgBIO', row 'Pancreas (8k)', column 'scGPT blood' (single-value column) |
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12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source dataset label Pancreas (8k) Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source dataset label Pancreas (8k) Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split No split; each whole dataset is embedded and scored Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split No split; each whole dataset is embedded and scored Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: used in gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: used in gfm-guides-20261014-kedzierska2025-protocol-cell-embedding Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: used in gfm-guides-20261014-kedzierska2025-protocol-umap-embedding Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: used in gfm-guides-20261014-kedzierska2025-protocol-umap-embedding Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1 sheet TableS1 (dataset overview) and TableS2 (sources); page 8-9 'Datasets'; page 11 'Data availability' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: gfm-guides-20261014-kedzierska2025-data-pancreas-8k