Pancreas (8k) (Kedzierska et al. 2025): description
Description of Pancreas (8k) (Kedzierska et al. 2025)
Row labelled 'Pancreas (8k)' in the score sheets: the Pancreas subset without GEO GSE84133, which was in Geneformer pretraining. The Methods (page 9) say both the complete Pancreas dataset and its non-overlapping subset were scored 'in Additional file 1: Tables S1 and S5', which are the two score sheets, and this is their only extra Pancreas row. The workbook itself does not name the subset.
The Methods identify the subset, so the description no longer calls the identification unconfirmed.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field description Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Row labelled 'Pancreas (8k)' in the score sheets. The Methods say the authors also evaluated the Pancreas subset that does not overlap Geneformer pretraining (GEO GSE84133 excluded); the workbook does not state that this row is that subset. Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Row labelled 'Pancreas (8k)' in the score sheets. The Methods say the authors also evaluated the Pancreas subset that does not overlap Geneformer pretraining (GEO GSE84133 excluded); the workbook does not state that this row is that subset. Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Row labelled 'Pancreas (8k)' in the score sheets: the Pancreas subset without GEO GSE84133, which was in Geneformer pretraining. The Methods (page 9) say both the complete Pancreas dataset and its non-overlapping subset were scored 'in Additional file 1: Tables S1 and S5', which are the two score sheets, and this is their only extra Pancreas row. The workbook itself does not name the subset. Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Row labelled 'Pancreas (8k)' in the score sheets: the Pancreas subset without GEO GSE84133, which was in Geneformer pretraining. The Methods (page 9) say both the complete Pancreas dataset and its non-overlapping subset were scored 'in Additional file 1: Tables S1 and S5', which are the two score sheets, and this is their only extra Pancreas row. The workbook itself does not name the subset. Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description The Methods identify the subset, so the description no longer calls the identification unconfirmed. Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description The Methods identify the subset, so the description no longer calls the identification unconfirmed. Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-23-5347695500ed · Record review: source checked
2 source records and release history
- Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) · Original source · Version of record, Genome Biology 26:101, published 2025-04-18
- Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Original source · Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record
Technical metadata and extraction receipts
Stable ID: metadata-correction-ad55c10bf59455b946f2
- field
- description
- previous value
- Row labelled 'Pancreas (8k)' in the score sheets. The Methods say the authors also evaluated the Pancreas subset that does not overlap Geneformer pretraining (GEO GSE84133 excluded); the workbook does not state that this row is that subset.
- value
- Row labelled 'Pancreas (8k)' in the score sheets: the Pancreas subset without GEO GSE84133, which was in Geneformer pretraining. The Methods (page 9) say both the complete Pancreas dataset and its non-overlapping subset were scored 'in Additional file 1: Tables S1 and S5', which are the two score sheets, and this is their only extra Pancreas row. The workbook itself does not name the subset.
- source locator
- Article page 9 'Datasets' paragraph 3; Additional file 1 sheets TableS6 and TableS7 row 'Pancreas (8k)'
- review
- method: source-hash-verification; scope-review; method note: Methods paragraph re-read in the archived PDF; workbook rows re-read.; reviewer: claude; reviewer note: Claude (Opus 5.5) research agent, independent of the extractor; no human review claimed; date: 2026-10-14; artifact sha256: 8efcc5fcb2e35b9a04b1ee9e03581e20fffeb5521a4a4c748a6f9b34f7d3c47f; retrieval url: https://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-025-03574-x.pdf; note: See docs/reviews/2026-10-14-gfm-guide-evidence-review.md.