TraitGym fine-mapped UK Biobank GWAS variants (PIP above 0.9) with matched controls (PIP below 0.01), after removing positions overlapping AVI training or validation variants.
15 evaluations · 15 results. Different protocols are not a single leaderboard.
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8 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
Limitations1 values
| AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Original printed counts +409/-3686 Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Positive count 409 Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Source location Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Test count 4095 Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Description TraitGym fine-mapped UK Biobank GWAS variants (PIP above 0.9) with matched controls (PIP below 0.01), after removing positions overlapping AVI training or validation variants. Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Relationship: same data as lit-genomics-20261011-traitgym-data-complex-traits-matched-9 Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Name TraitGym Complex traits after AVI positional filtering (AlphaGenome Atlas) Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2B panel header 'Fine-mapped GWAS (TraitGym) (+409/-3686)'; Methods 'TraitGym Phenotypic Association' (page 28) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: ag-atlas-20261019-subset-traitgym-complex