Dataset

TraitGym Complex traits, matched 9 controls

TraitGym complex_traits_matched_9: causal variants with nine matched negative controls each.

Evaluation results

75 evaluations · 75 results. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: AIDO.DNA_absLLR.plus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.103 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.002443845069261043 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA_absLLR.plus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_absLLR.plus.score.csv, column 'score' (standard error in column 'se')
Configuration: AIDO.DNA_Embeddings.minus.inner_product (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.109 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.003903483581716696 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA_Embeddings.minus.inner_product on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_Embeddings.minus.inner_product.csv, column 'score' (standard error in column 'se')
Configuration: AIDO.DNA_Embeddings.plus.cosine_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.102 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.002738296601032076 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA_Embeddings.plus.cosine_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_Embeddings.plus.cosine_distance.csv, column 'score' (standard error in column 'se')
Configuration: AIDO.DNA_Embeddings.plus.euclidean_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.102 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0026672414045521594 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA_Embeddings.plus.euclidean_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_Embeddings.plus.euclidean_distance.csv, column 'score' (standard error in column 'se')
Configuration: AIDO.DNA_LLR.minus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.106 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0025182734251406966 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA_LLR.minus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_LLR.minus.score.csv, column 'score' (standard error in column 'se')
Configuration: AIDO.DNA.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.152 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.005049713863563956 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AIDO.DNA.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: Borzoi_L2_L2.plus.all (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.236 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.009154607334170136 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Borzoi_L2_L2.plus.all on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv, column 'score' (standard error in column 'se')
Configuration: Borzoi.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.297 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.014070612782420427 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Borzoi.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: CADD.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.284 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.012406150330154912 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CADD.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: CADD+Borzoi.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.351 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0163444581544798 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CADD+Borzoi.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+Borzoi.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: CADD+GPN-MSA.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.297 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.011590379617788582 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source CADD+GPN-MSA.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: CADD+GPN-MSA+Borzoi.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.362 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.015452234996450652 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source CADD+GPN-MSA+Borzoi.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: CADD.plus.RawScore (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.25 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.01018346234907977 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CADD.plus.RawScore on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/CADD.plus.RawScore.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus_absLLR.plus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.0971 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0019689455982978867 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus_absLLR.plus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_absLLR.plus.score.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus_Embeddings.minus.inner_product (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.117 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.006248675945733252 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus_Embeddings.minus.inner_product on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.minus.inner_product.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus_Embeddings.plus.cosine_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.115 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0037614076427251136 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus_Embeddings.plus.cosine_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus_Embeddings.plus.euclidean_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.115 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.00366295980291948 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus_Embeddings.plus.euclidean_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.euclidean_distance.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus_LLR.minus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.0983 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0018751240045551348 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus_LLR.minus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv, column 'score' (standard error in column 'se')
Configuration: Caduceus.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.151 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.006712807881266443 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: Enformer_L2_L2.plus.all (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.245 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.007670187349607077 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer_L2_L2.plus.all on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv, column 'score' (standard error in column 'se')
Configuration: Enformer.LogisticRegression.chrom (TraitGym)	Protocol: TraitGym Complex traits, linear-probing, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.303 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.010447115262766551 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer.LogisticRegression.chrom on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-linear-probing Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Enformer.LogisticRegression.chrom.csv, column 'score' (standard error in column 'se')
Configuration: evo2_1b_base_absLLR.plus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.0976 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.002187413511062486 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_absLLR.plus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_absLLR.plus.score.csv, column 'score' (standard error in column 'se')
Configuration: evo2_1b_base_Embeddings.minus.inner_product (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.122 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0045420079807488535 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_Embeddings.minus.inner_product on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_Embeddings.minus.inner_product.csv, column 'score' (standard error in column 'se')
Configuration: evo2_1b_base_Embeddings.plus.cosine_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.105 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.002057172765313782 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_Embeddings.plus.cosine_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_Embeddings.plus.cosine_distance.csv, column 'score' (standard error in column 'se')
Configuration: evo2_1b_base_Embeddings.plus.euclidean_distance (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.116 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.0035650520551844147 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_Embeddings.plus.euclidean_distance on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_Embeddings.plus.euclidean_distance.csv, column 'score' (standard error in column 'se')

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified
Sample annotations are recorded: not yet verified
Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
A pinned run recipe exists: not yet verified
Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Independent validation data exist: not yet verified
Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Population Complex traits; nine matched controls per causal variant (baseline AUPRC 0.1) Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.population` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact
Source location complex_traits_matched_9/test.parquet (not downloaded); README Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact
Split Leave-one-chromosome-out for linear probing; all variants scored for zero-shot Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.split` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact
Version Hugging Face revision 1fde19555fe8 Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact
Description TraitGym complex_traits_matched_9: causal variants with nine matched negative controls each. Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact
Name TraitGym Complex traits, matched 9 controls Context-only references	TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) Original source ↗ complex_traits_matched_9/test.parquet (not downloaded); README Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/ Retrieved: 2026-10-11T01:40:33Z	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e` Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz) Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · Original source · Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-traitgym-data-complex-traits-matched-9

areas: dna-genomes
contexts: research
version: Hugging Face revision 1fde19555fe8
split: Leave-one-chromosome-out for linear probing; all variants scored for zero-shot
population: Complex traits; nine matched controls per causal variant (baseline AUPRC 0.1)
source locator: complex_traits_matched_9/test.parquet (not downloaded); README

Related records

Suggest a correction