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Result

AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') of AIDO.DNA_absLLR.plus.score (TraitGym) on TraitGym Complex traits, matched 9 controls

0.103 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all')

Methods

Tested configuration
AIDO.DNA_absLLR.plus.score (TraitGym)
Protocol
TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average
Dataset
TraitGym Complex traits, matched 9 controls
Procedure
TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average
Evaluation
AIDO.DNA_absLLR.plus.score on TraitGym complex_traits_matched_9
Coverage
Not reported scored / Not reported eligible
Uncertainty
SE 0.002443845069261043
Evidence
Independent external evaluation · source checkedTraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_absLLR.plus.score.csv, column 'score' (standard error in column 'se')

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split
All variants
Adaptation
zero-shot
Scoring implementation
AUPRC per chromosome, weighted average by sample size

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Reported result
0.10321492583738259
Individual claims		TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym)

Original source ↗

complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_absLLR.plus.score.csv, column 'score' (standard error in column 'se')

Version: Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/
Retrieved: 2026-10-11T01:40:33Z

source checked

["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-11

independent paper

Audit details

Extraction: Read the single data row (model, metric, score, se) of each pinned CSV with tools/extract_traitgym.py; the metric column is asserted to be AUPRC and the model column to match the file name. File SHA-256 ab6cbe960265a241b6e04f3dc0d5ed55f0151cd1eba3d42ef826205f0908ff95. Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md.

Field: attributes.printed_value

Source artifact SHA-256: 44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e

Hash scope: SHA-256 of a JSON bundle listing every retrieved CSV with its path, its own SHA-256 and its bytes (artifacts/traitgym-metrics-bundle.json.gz)

Inspected artifact

Extraction artifact SHA-256: 44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e

Extraction artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-traitgym-result-aido-dna-absllr-plus-score-complex-traits-matched-9

metric
auprc
metric direction
higher
unit
unitless
printed value
0.10321492583738259
source locator
complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/AIDO.DNA_absLLR.plus.score.csv, column 'score' (standard error in column 'se')
review
method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Matched the archived bundle's SHA-256 and every per-file SHA-256 inside it; re-downloaded 3 CSVs from Hugging Face at revision 1fde1955 with matching hashes; all 156 printed, numeric and SE values equal the CSV score and se.; reviewer: claude; reviewer note: Claude review agent reviewer-gen-3, independent of the extractor lit-genomics; no human review claimed; date: 2026-10-11; artifact sha256: 44dfedc00ac5c7918b188af2a5a200f08da3b641f73d7d5327e26f94a7d0372e; retrieval url: https://huggingface.co/datasets/songlab/TraitGym/tree/1fde19555fe8c0a55b1382bdf4c6f7082209f566; note: Extraction: Read the single data row (model, metric, score, se) of each pinned CSV with tools/extract_traitgym.py; the metric column is asserted to be AUPRC and the model column to match the file name. File SHA-256 ab6cbe960265a241b6e04f3dc0d5ed55f0151cd1eba3d42ef826205f0908ff95. Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md.
numeric value
0.10321492583738259
metric qualifier
weighted average over chromosomes of per-chromosome AUPRC; subset 'all'
uncertainty
type: standard_error; value: 0.002443845069261043; method: bootstrap; printed: 0.002443845069261043; source column: se
printed value basis
Full-precision number as stored in the official CSV
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