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Plinder-L95

Source-defined subset: Plinder-L95. Exact membership and scoring coverage remain as reported in the cited artifact.

Evaluation results

7 evaluations · 33 results. Different protocols are not a single leaderboard.

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Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

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Evidence table

Inspect claims, sources and review details

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3 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Source location Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Context-only references	Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Original source ↗ Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record Retrieved: 2026-09-16T10:41:16.555674+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `78a77b9a0ab8bfa371f5b9baef3f443f4590d6e71cf864d67e90e9ebdfa7fc1b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Source-defined subset: Plinder-L95. Exact membership and scoring coverage remain as reported in the cited artifact. Context-only references	Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Original source ↗ Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record Retrieved: 2026-09-16T10:41:16.555674+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `78a77b9a0ab8bfa371f5b9baef3f443f4590d6e71cf864d67e90e9ebdfa7fc1b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Name Plinder-L95 Context-only references	Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Original source ↗ Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record Retrieved: 2026-09-16T10:41:16.555674+00:00	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `78a77b9a0ab8bfa371f5b9baef3f443f4590d6e71cf864d67e90e9ebdfa7fc1b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: acquired-dataset-500bdf8d9750fb032041

source locator: Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a
missing metadata: split manifest: reason: unextracted

Related records

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Boltz-1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	60.6% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column chirality; footnote a
Configuration: Boltz Rc	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.3 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz Rc · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column angle_rmsd; footnote a
Configuration: Vina	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95	100% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column chirality; footnote a
Configuration: Boltz R1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	99.8% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column chirality; footnote a
Configuration: DiffDock	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · rigid-receptor docking Dataset subset: Plinder-L95	0 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DiffDock · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column angle_rmsd; footnote a
Configuration: Boltz-1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.0283 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column bond_rmsd; footnote a
Configuration: DiffDock	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · rigid-receptor docking Dataset subset: Plinder-L95	100% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DiffDock · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column chirality; footnote a
Configuration: DiffDock	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · rigid-receptor docking Dataset subset: Plinder-L95	0 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DiffDock · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column bond_rmsd; footnote a
Configuration: Boltz-1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.438 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column angle_rmsd; footnote a
Configuration: Vina	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95	0 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column angle_rmsd; footnote a
Configuration: AF3	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.19 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column angle_rmsd; footnote a
Configuration: Boltz Rc	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.407 RMSD (protein; median over complexes; atom set not stated) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz Rc · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column protein_rmsd; footnote a
Configuration: Boltz R	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	100% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column chirality; footnote a
Configuration: AF3	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.998 Ligand RMSD (median over complexes; pocket superposition (residues within 10 A)) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column ligand_rmsd; footnote a
Configuration: Boltz R1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.897 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column angle_rmsd; footnote a
Configuration: Boltz R	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.41 RMSD (protein; median over complexes; atom set not stated) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a
Configuration: AF3	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	70.8% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column chirality; footnote a
Configuration: Boltz R	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.0448 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column angle_rmsd; footnote a
Configuration: Boltz R	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.0003 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column bond_rmsd; footnote a
Configuration: AF3	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.363 RMSD (protein; median over complexes; atom set not stated) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a
Configuration: Boltz Rc	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.0215 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz Rc · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column bond_rmsd; footnote a
Configuration: Boltz-1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.404 RMSD (protein; median over complexes; atom set not stated) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column protein_rmsd; footnote a
Configuration: Vina	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95	0 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column bond_rmsd; footnote a
Configuration: Boltz R1	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	0.0345 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column bond_rmsd; footnote a
Configuration: Boltz R	Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding Dataset subset: Plinder-L95	1.38 Ligand RMSD (median over complexes; pocket superposition (residues within 10 A)) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column ligand_rmsd; footnote a