Vina
Entry in PLINDER, identified only by its entry label; the model or method behind it is not identified.
Overview
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Evaluations and results
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box · Dataset subset: Plinder-L95
Sorted by Bond angle RMSD (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 4 result rows with coverage, uncertainty and sources
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Vina | Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95 | 100% Chirality consistency percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceVina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: percentage of molecules with consistent chirality Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column chirality; footnote a |
| Configuration: Vina | Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95 | 0 Bond angle RMSD degree · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceVina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: unreported in Table 1 footnote Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column angle_rmsd; footnote a |
| Configuration: Vina | Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95 | 0 Bond length RMSD (median over complexes) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceVina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column bond_rmsd; footnote a |
| Configuration: Vina | Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box Dataset subset: Plinder-L95 | 2.21 Ligand RMSD (median over complexes; pocket superposition (residues within 10 A)) angstrom · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceVina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Aggregation: median Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column ligand_rmsd; footnote a |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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Evidence
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Evidence table
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: discovered
1 source record and release history
- Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: acquired-configuration-87313c429ad9c64b2773
- source locator
- Table 1 (XML tbl1); row Vina; column ligand_rmsd; footnote a
- reported configuration
- Vina
- missing metadata
- checkpoint revision: reason: unreported; model family: reason: unextracted
- provenance note
- Exact source-reported configuration or submission label. Family membership, checkpoint identity and aliases have not been inferred.