Screen 1 expert-nominated knockouts train methods; Screen 2 evaluates new algorithm-nominated knockouts. GEO GSE327731. Abstract reports 61 nominations; Results says 57 selected targets; repository describes 59 screen-2 genes; 50 perturbations pass preprocessing. These are not interchangeable denominators.
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Release 2026-09-30-e37e3ab1284d · Evidence verified: Not verified
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54 evaluations · 54 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CPPC submitted-method nomination campaign | Protocol: CPPC prospective nomination of desired T-cell states Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | two named-desired-state-hits targets · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Cancer Immunotherapy Data Science Challenge · Abstract; Results Figure 5: Dimt1 and Ndufv2 exceed Screen-1 targets on ICB objective |
| Configuration: CPPC original submission row 10 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.799 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C10; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 11 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.799 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C11; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 12 (5Features) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.813 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C12; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 13 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.815 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C13; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 14 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.82 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C14; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 15 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.829 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C15; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 16 (scETM) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.849 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C16; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 17 (scTenifoldNet) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.859 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C17; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 18 (GO_knn) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.901 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C18; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 19 (LowExp) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.913 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C19; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 2 (PPI_Weighted) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.714 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C2; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 20 (unnamed method) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.92 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C20; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 21 (interv) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 1.27 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C21; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 3 (GWPS_K562 (H2M)) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.75 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C3; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 4 (14Features) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.764 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C4; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 5 (scBERT) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.767 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C5; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 6 (scVI) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.779 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C6; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 7 (Expression_Conditioned) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.788 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C7; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 8 (Exon) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.789 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C8; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 9 (Gene2Vec) | Protocol: CPPC original Challenge 1 final four-knockout prediction score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.79 mean-summed-cell-state-l1 summed absolute proportion error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell C9; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 11 (unnamed method) | Protocol: CPPC original Challenge 2 prospective target ranking score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.502 robust-topk-overlap-auc score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell D11; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 12 (5Features) | Protocol: CPPC original Challenge 2 prospective target ranking score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.542 robust-topk-overlap-auc score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell D12; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 13 (unnamed method) | Protocol: CPPC original Challenge 2 prospective target ranking score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.532 robust-topk-overlap-auc score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell D13; raw XLSX numeric value (not rounded display) |
| Configuration: CPPC original submission row 14 (unnamed method) | Protocol: CPPC original Challenge 2 prospective target ranking score Dataset: CPPC B16-OVA mouse melanoma T-cell perturbation screens | 0.547 robust-topk-overlap-auc score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported CPPC Table S2 original and reimplemented submission comparisons · Supplementary Table S2; media-3.xlsx sheet 'Challenge 1 & 2'; cell D14; raw XLSX numeric value (not rounded display) |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.accession GSE327731 Context-only references | Cancer Immunotherapy Data Science Challenge official code No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 283328a9b8afc6e882eeb503ac4710bbe9f37371 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.accession GSE327731 Context-only references | Cancer Immunotherapy Data Science Challenge No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.64898/2026.05.21.726863v1; 2026 preprint | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.context Cas9 OT1 CD8 T cells transferred into B16-OVA melanoma mice Context-only references | Cancer Immunotherapy Data Science Challenge official code No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 283328a9b8afc6e882eeb503ac4710bbe9f37371 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.context Cas9 OT1 CD8 T cells transferred into B16-OVA melanoma mice Context-only references | Cancer Immunotherapy Data Science Challenge No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.64898/2026.05.21.726863v1; 2026 preprint | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.denominator_warning 61 nominations / Results 57 selected targets / README 59 screen-2 targets / 50 post-QC perturbations; candidate-level reconciliation outstanding Context-only references | Cancer Immunotherapy Data Science Challenge official code No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 283328a9b8afc6e882eeb503ac4710bbe9f37371 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.denominator_warning 61 nominations / Results 57 selected targets / README 59 screen-2 targets / 50 post-QC perturbations; candidate-level reconciliation outstanding Context-only references | Cancer Immunotherapy Data Science Challenge No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.64898/2026.05.21.726863v1; 2026 preprint | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.species Mus musculus Context-only references | Cancer Immunotherapy Data Science Challenge official code No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 283328a9b8afc6e882eeb503ac4710bbe9f37371 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.species Mus musculus Context-only references | Cancer Immunotherapy Data Science Challenge No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.64898/2026.05.21.726863v1; 2026 preprint | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Screen 1 expert-nominated knockouts train methods; Screen 2 evaluates new algorithm-nominated knockouts. GEO GSE327731. Abstract reports 61 nominations; Results says 57 selected targets; repository describes 59 screen-2 genes; 50 perturbations pass preprocessing. These are not interchangeable denominators. Context-only references | Cancer Immunotherapy Data Science Challenge official code No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 283328a9b8afc6e882eeb503ac4710bbe9f37371 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Screen 1 expert-nominated knockouts train methods; Screen 2 evaluates new algorithm-nominated knockouts. GEO GSE327731. Abstract reports 61 nominations; Results says 57 selected targets; repository describes 59 screen-2 genes; 50 perturbations pass preprocessing. These are not interchangeable denominators. Context-only references | Cancer Immunotherapy Data Science Challenge No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.64898/2026.05.21.726863v1; 2026 preprint | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
Stable ID: ucc-research-data-cppc-mouse-tcells