Dataset

Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)

Long-read input in Lin et al. 2026.

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Release 2026-10-10-7b8f80935f90 · Evidence verified: Not verified

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Evaluation results

8 evaluations · 32 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.86 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FUSILLI', column 'F1'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.92 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FUSILLI', column 'Precision'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.81 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FUSILLI', column 'Sensitivity (recall)'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.92 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FUSILLI', column 'Specificity'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.42 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FUSILLI', column 'F1'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.92 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FUSILLI', column 'Precision'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.27 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FUSILLI', column 'Sensitivity (recall)'
Configuration: FUSILLI on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.95 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FUSILLI on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FUSILLI', column 'Specificity'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.76 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FusionSeeker', column 'F1'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.94 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FusionSeeker', column 'Precision'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.63 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FusionSeeker', column 'Sensitivity (recall)'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.96 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'FusionSeeker', column 'Specificity'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.16 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FusionSeeker', column 'F1'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	1 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FusionSeeker', column 'Precision'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.09 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FusionSeeker', column 'Sensitivity (recall)'
Configuration: FusionSeeker on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	1 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source FusionSeeker on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FusionSeeker', column 'Specificity'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.78 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'JAFFAL', column 'F1'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.79 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'JAFFAL', column 'Precision'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.76 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'JAFFAL', column 'Sensitivity (recall)'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.81 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'JAFFAL', column 'Specificity'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.36 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'JAFFAL', column 'F1'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.9 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'JAFFAL', column 'Precision'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.23 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'JAFFAL', column 'Sensitivity (recall)'
Configuration: JAFFAL on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.95 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source JAFFAL on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-low-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'JAFFAL', column 'Specificity'
Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.81 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'LongGF', column 'F1'

Source checking is not independent reproduction. Release 2026-10-10-7b8f80935f90.

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Inspect claims, sources and review details

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6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-7b8f80935f90
Property and statement	Original source and location	Review and provenance
attributes.assay ONT PCR-cDNA barcoding, R9.4.1 flow cells, Guppy high-accuracy base calling Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.assay` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.population High-depth cohort: 51 samples (27 with a known B-ALL fusion), mean 11.2 M reads; low-depth cohort: 119 sequencing runs of 68 samples (79 runs with a known fusion per Methods 'Fusion Performance Evaluations'; Results give 81 samples with known genomic subtypes), mean 1.4 M reads. The high-depth samples are a subset of the low-depth samples. Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.population` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.split Two cohorts; the high-depth cohort is a subset of the low-depth samples Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.split` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
description Long-read input in Lin et al. 2026. Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
name Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN) Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2 Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-10-10-7b8f80935f90 · Record review: source checked

1 source records and release history

Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Original source · Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML

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Technical metadata and extraction receipts

Stable ID: rna-fusion-20261009-data-lin2026-ball-nanopore

areas: rna-transcriptomes
contexts: clinical_research
population: High-depth cohort: 51 samples (27 with a known B-ALL fusion), mean 11.2 M reads; low-depth cohort: 119 sequencing runs of 68 samples (79 runs with a known fusion per Methods 'Fusion Performance Evaluations'; Results give 81 samples with known genomic subtypes), mean 1.4 M reads. The high-depth samples are a subset of the low-depth samples.
assay: ONT PCR-cDNA barcoding, R9.4.1 flow cells, Guppy high-accuracy base calling
split: Two cohorts; the high-depth cohort is a subset of the low-depth samples
source locator: Materials and Methods 'Samples', 'Library Preparation', 'Fusion Performance Evaluations'; Tables 1-2
missing metadata: version: reason: unreported

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