Evaluation

LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026)

Published fusion caller comparison; transcribed, not reproduced.

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Release 2026-10-09-ba02f2f4a36e · Evidence verified: Not verified

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Evaluation results

1 evaluation · 4 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.81 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'LongGF', column 'F1'
Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.95 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'LongGF', column 'Precision'
Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.7 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'LongGF', column 'Sensitivity (recall)'
Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)	Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3) Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)	0.96 specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source LongGF on paediatric B-ALL nanopore WTS, high-depth (Lin et al. 2026) rna-fusion-20261009-protocol-lin2026-high-depth Aggregation: Not reported Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 3, row 'LongGF', column 'Specificity'

Source checking is not independent reproduction. Release 2026-10-09-ba02f2f4a36e.

Evaluation procedure

rna-fusion-20261009-protocol-lin2026-high-depth

Configuration: LongGF on nanopore cDNA reads (Lin et al. 2026)
Protocol: Paediatric B-ALL nanopore WTS, high-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 3)
Dataset: Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)

origin: Independent external evaluation
configuration: Primary source as retrieved 2026-10-09
protocol id: rna-fusion-20261009-protocol-lin2026-high-depth
dataset version: Not reported
split: high-depth
population: 51 samples, 27 with a known B-ALL fusion
inputs: Nanopore PCR-cDNA reads
adaptation: Not reported
metric implementation: Dominant-fusion per-sample classification (Methods)
aggregation: Per sample or sequencing run
budget: Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split: high-depth
Adaptation: Not reported
Scoring implementation: Dominant-fusion per-sample classification (Methods)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

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18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-ba02f2f4a36e
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation Not reported Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	missing or unspecified No individual claim review recorded independent paper Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.aggregation Per sample or sequencing run Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.budget Not reported Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	missing or unspecified No individual claim review recorded independent paper Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.dataset_version Not reported Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	missing or unspecified No individual claim review recorded independent paper Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.inputs Nanopore PCR-cDNA reads Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation Dominant-fusion per-sample classification (Methods) Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population 51 samples, 27 with a known B-ALL fusion Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.population` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id rna-fusion-20261009-protocol-lin2026-high-depth Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split high-depth Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.origin independent_paper Context-only references	Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Original source ↗ Table 3, row 'LongGF' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML Retrieved: 2026-10-09T20:38:17Z	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.origin` Source artifact SHA-256: `8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-10-09-ba02f2f4a36e · Record review: source checked

1 source records and release history

Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Original source · Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML

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Technical metadata and extraction receipts

Stable ID: rna-fusion-20261009-eval-lin2026-longgf-high-depth

areas: rna-transcriptomes
contexts: clinical_research
origin: independent_paper
protocol: rna-fusion-20261009-protocol-lin2026-high-depth
version: Primary source as retrieved 2026-10-09
comparison: protocol id: rna-fusion-20261009-protocol-lin2026-high-depth; dataset version: Not reported; split: high-depth; population: 51 samples, 27 with a known B-ALL fusion; inputs: Nanopore PCR-cDNA reads; adaptation: Not reported; metric implementation: Dominant-fusion per-sample classification (Methods); aggregation: Per sample or sequencing run; budget: Not reported
source locator: Table 3, row 'LongGF'
missing metadata: comparison.dataset version: reason: unreported

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