1 specificity
lin2026-fusionseeker-low-depth specificity (per-sample dominant B-ALL fusion, low-depth cohort)
- Tested configuration
- FusionSeeker on nanopore cDNA reads (Lin et al. 2026)
- Protocol
- Paediatric B-ALL nanopore WTS, low-depth cohort, dominant-fusion classification (Lin et al. 2026 Table 6)
- Dataset
- Paediatric B-ALL nanopore PCR-cDNA whole-transcriptome sequencing (UNC, St Jude, ECOG-ACRIN)
- Procedure
- rna-fusion-20261009-protocol-lin2026-low-depth
- Evaluation
- FusionSeeker on paediatric B-ALL nanopore WTS, low-depth (Lin et al. 2026)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedLong-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Table 6, row 'FusionSeeker', column 'Specificity'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- low-depth
- Adaptation
- Not reported
- Scoring implementation
- Dominant-fusion per-sample classification (Methods)
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 1.00 Individual claims | Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia Table 6, row 'FusionSeeker', column 'Specificity' Version: Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsExtracted by deterministic parse of Tables 3 and 6 (table-wrap tbl3, tbl6) in the pinned article XML (extract/extract_rna_fusion.py), with captions, headers and algorithm labels asserted. printed_value is the cell text. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
1 source records and release history
- Long-Read Whole-Transcriptome Sequencing and Selective Gene Panel Profiling Enable Sensitive Detection of Fusion Oncogenes in Pediatric B-Cell Acute Lymphoblastic Leukemia · Original source · Journal of Molecular Diagnostics 28(5):406, published 2026-02-10; PMC13197905 full-text XML
Technical metadata and extraction receipts
Stable ID: rna-fusion-20261009-result-lin2026-fusionseeker-low-depth-specificity
- metric
- specificity
- metric direction
- higher
- unit
- fraction
- metric qualifier
- per-sample dominant B-ALL fusion, low-depth cohort
- printed value
- 1.00
- source locator
- Table 6, row 'FusionSeeker', column 'Specificity'
- missing metadata
- uncertainty: reason: unreported
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the article XML and matched its SHA-256. Read table-wrap tbl3 and tbl6 with the reviewer's own parser and checked printed and numeric value, metric, column, algorithm label and the linked configuration and protocol. F1 recomputes from the printed sensitivity and precision within rounding.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: 8cc3b4bca5e2fe9b068a1e891366854d974f3df3102425959e600b9ea19f87b6; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13197905/fullTextXML; note: Extracted by deterministic parse of Tables 3 and 6 (table-wrap tbl3, tbl6) in the pinned article XML (extract/extract_rna_fusion.py), with captions, headers and algorithm labels asserted. printed_value is the cell text. Pending independent review. Independent review 2026-10-09: value and identity match the source.
- numeric value
- 1.00