Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
10 evaluations · 40 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: BPfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.823 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF |
| Configuration: ContextFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.824 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 6 ContextFold, column 8: ArchiveII Precision |
| Configuration: RNAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.577 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 10 RNAfold, column 7: ArchiveII F1 |
| Configuration: SPOT-RNA | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.73 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 4 SPOT-RNA, column 7: ArchiveII F1 |
| Configuration: BPfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.834 Recall unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 3 BPfold, column 9: ArchiveII Recall |
| Configuration: RNAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.551 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 10 RNAfold, column 8: ArchiveII Precision |
| Configuration: EternaFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.599 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 7: ArchiveII F1 |
| Configuration: RNAstructure | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.575 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF |
| Configuration: MXfold2 | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.711 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF |
| Configuration: CONTRAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.594 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 7 CONTRAfold, column 7: ArchiveII F1 |
| Configuration: MXfold2 | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.697 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 5 MXfold2, column 8: ArchiveII Precision |
| Configuration: SPOT-RNA | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.763 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 4 SPOT-RNA, column 8: ArchiveII Precision |
| Configuration: CONTRAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.588 Recall unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 7 CONTRAfold, column 9: ArchiveII Recall |
| Configuration: LinearFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.605 Recall unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 9 LinearFold, column 9: ArchiveII Recall |
| Configuration: SimFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.568 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 11 SimFold, column 7: ArchiveII F1 |
| Configuration: LinearFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.606 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 9 LinearFold, column 7: ArchiveII F1 |
| Configuration: CONTRAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.612 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 7 CONTRAfold, column 8: ArchiveII Precision |
| Configuration: SPOT-RNA | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.736 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF |
| Configuration: EternaFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.573 Precision unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 8: ArchiveII Precision |
| Configuration: RNAfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.613 Recall unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 10 RNAfold, column 9: ArchiveII Recall |
| Configuration: BPfold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.82 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 3 BPfold, column 7: ArchiveII F1 |
| Configuration: RNAstructure | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.573 F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 12 RNAstructure, column 7: ArchiveII F1 |
| Configuration: LinearFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.61 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF |
| Configuration: EternaFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.601 Interaction network fidelity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF |
| Configuration: EternaFold | Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII | 0.636 Recall unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 9: ArchiveII Recall |
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6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported population: count 3966 Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Reported population: unit RNA sequences Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name ArchiveII Context-only references | Deep generalizable prediction of RNA secondary structure via base pair motif energy Sequence-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold), and non-ML methods (LinearFold, RNAfold, SimFold, and RNAstructure) on bpRNA-TS0 ( n = 1305 RNAs) and ArchiveII ( n = 3966 RNAs) datasets; Table 1 (Tab1), row 3 BPfold, column 6: ArchiveII INF; Table 1 (Tab1), row 4 SPOT-RNA, column 6: ArchiveII INF; Table 1 (Tab1), row 5 MXfold2, column 6: ArchiveII INF; Table 1 (Tab1), row 6 ContextFold, column 6: ArchiveII INF; Table 1 (Tab1), row 7 CONTRAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF; Table 1 (Tab1), row 9 LinearFold, column 6: ArchiveII INF; Table 1 (Tab1), row 10 RNAfold, column 6: ArchiveII INF; Table 1 (Tab1), row 11 SimFold, column 6: ArchiveII INF; Table 1 (Tab1), row 12 RNAstructure, column 6: ArchiveII INF Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: paper-dataset-be2c18a91718ba4592